KEGG   PATHWAY: tab00020
Entry
tab00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tumebacillus algifaecis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tab00020  Citrate cycle (TCA cycle)
tab00020

Module
tab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tab00020]
tab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tab00020]
tab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tab00020]
Other DBs
GO: 0006099
Organism
Tumebacillus algifaecis [GN:tab]
Gene
CIG75_16400  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CIG75_05660  citrate synthase [KO:K01659] [EC:2.3.3.5]
CIG75_05580  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CIG75_05335  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CIG75_18065  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CIG75_08410  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CIG75_15395  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CIG75_15090  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CIG75_15195  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CIG75_15390  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CIG75_15085  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CIG75_15200  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CIG75_12120  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CIG75_12125  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CIG75_14240  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
CIG75_07745  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CIG75_07750  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CIG75_07740  succinate dehydrogenase [KO:K00241]
CIG75_04375  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CIG75_07205  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CIG75_05585  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CIG75_15755  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CIG75_14540  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CIG75_18080  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CIG75_18075  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CIG75_18070  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tab00010  Glycolysis / Gluconeogenesis
tab00053  Ascorbate and aldarate metabolism
tab00061  Fatty acid biosynthesis
tab00062  Fatty acid elongation
tab00071  Fatty acid degradation
tab00190  Oxidative phosphorylation
tab00220  Arginine biosynthesis
tab00250  Alanine, aspartate and glutamate metabolism
tab00280  Valine, leucine and isoleucine degradation
tab00350  Tyrosine metabolism
tab00470  D-Amino acid metabolism
tab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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