KEGG   PATHWAY: taw00020
Entry
taw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tabrizicola piscis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
taw00020  Citrate cycle (TCA cycle)
taw00020

Module
taw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:taw00020]
taw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:taw00020]
taw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:taw00020]
Other DBs
GO: 0006099
Organism
Tabrizicola piscis [GN:taw]
Gene
EI545_18425  citrate synthase [KO:K01647] [EC:2.3.3.1]
EI545_18100  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
EI545_01665  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EI545_11255  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EI545_07030  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EI545_19910  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EI545_07055  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EI545_07025  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EI545_07015  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EI545_06945  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EI545_06925  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EI545_06955  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EI545_06950  succinate dehydrogenase [KO:K00242]
EI545_17060  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EI545_06990  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EI545_16730  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
EI545_08270  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
EI545_20815  transketolase [KO:K00163] [EC:1.2.4.1]
EI545_19590  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
EI545_19585  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
EI545_19580  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
taw00010  Glycolysis / Gluconeogenesis
taw00053  Ascorbate and aldarate metabolism
taw00061  Fatty acid biosynthesis
taw00071  Fatty acid degradation
taw00190  Oxidative phosphorylation
taw00220  Arginine biosynthesis
taw00250  Alanine, aspartate and glutamate metabolism
taw00280  Valine, leucine and isoleucine degradation
taw00350  Tyrosine metabolism
taw00470  D-Amino acid metabolism
taw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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