KEGG   PATHWAY: tca03008
Entry
tca03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Tribolium castaneum (red flour beetle)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
tca03008  Ribosome biogenesis in eukaryotes
tca03008

Organism
Tribolium castaneum (red flour beetle) [GN:tca]
Gene
658630  casein kinase II subunit beta [KO:K03115]
660746  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
662984  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
656445  nucleolar protein 6 [KO:K14544]
660446  ribosomal RNA-processing protein 7 homolog A [KO:K14545]
103312459  WD repeat-containing protein 43 [KO:K14546]
663378  cirhin [KO:K14548]
662465  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
663649  WD repeat-containing protein 75 [KO:K14552]
655035  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
655179  WD repeat-containing protein 36 [KO:K14554]
663409  zinc finger protein 267 [KO:K14555]
103313955  transducin beta-like protein 3 [KO:K14555]
658568  WD repeat-containing protein 3 [KO:K14556]
103312440  U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
658982  periodic tryptophan protein 2 homolog [KO:K14558]
663085  periodic tryptophan protein 2 homolog [KO:K14558]
661277  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
655968  U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
656751  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
662315  nucleolar protein 56 [KO:K14564]
662214  nucleolar protein 58 [KO:K14565]
664143  NHP2-like protein 1 [KO:K12845]
655639  H/ACA ribonucleoprotein complex subunit 4 [KO:K11131] [EC:5.4.99.-]
661229  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
100142234  H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
662792  H/ACA ribonucleoprotein complex subunit 3 [KO:K11130]
657722  rRNA-processing protein FCF1 homolog [KO:K14566]
661854  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
655800  ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
664400  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
655542  ribosome biogenesis protein BMS1 homolog [KO:K14569]
662819  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
656339  probable RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
657766  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
103313796  hypothetical protein [KO:K14523] [EC:3.1.26.5]
657809  ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
663501  ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
103312405  ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
658519  ribonuclease P protein subunit p20 [KO:K14527] [EC:3.1.26.5]
103313093  ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
103312322  RNA exonuclease 1 homolog [KO:K14570] [EC:3.1.-.-]
660590  putative RNA exonuclease NEF-sp [KO:K14570] [EC:3.1.-.-]
660205  oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
663618  XRN1; 5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
662556  5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
664391  nucleolar GTP-binding protein 1 [KO:K06943]
655860  nucleolar GTP-binding protein 2 [KO:K14537]
663428  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
661314  NVL; nuclear valosin-containing protein-like [KO:K14571]
661291  Mdn1; midasin [KO:K14572]
663199  RNA-binding protein 28 [KO:K14573]
662963  RNA-binding protein NOB1 [KO:K11883]
657695  GTP-binding nuclear protein Ran [KO:K07936]
662656  exportin-1 [KO:K14290]
655503  60S ribosomal export protein NMD3 [KO:K07562]
103312682  nuclear RNA export factor 2 [KO:K14284]
103312683  nuclear RNA export factor 1 [KO:K14284]
656618  nuclear RNA export factor 1 [KO:K14284]
657794  NTF2-related export protein [KO:K14285]
658655  eukaryotic translation initiation factor 6 [KO:K03264]
658415  eukaryotic translation initiation factor 6 [KO:K03264]
658492  eukaryotic translation initiation factor 6-like [KO:K03264]
663192  ribosome maturation protein SBDS [KO:K14574]
656169  elongation factor Tu GTP-binding domain-containing protein 1 [KO:K14536] [EC:3.6.5.-]
657331  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
659384  spermatogenesis-associated protein 5 [KO:K14575]
103312254  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
660167  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
655344  serine/threonine-protein kinase RIO2 [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
tca03010  Ribosome
KO pathway
ko03008   
LinkDB

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