KEGG   PATHWAY: tcr00020
Entry
tcr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Trypanosoma cruzi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tcr00020  Citrate cycle (TCA cycle)
tcr00020

Module
tcr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tcr00020]
tcr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tcr00020]
tcr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tcr00020]
Other DBs
GO: 0006099
Organism
Trypanosoma cruzi [GN:tcr]
Gene
511277.110  citrate synthase [KO:K01647] [EC:2.3.3.1]
509801.30  citrate synthase [KO:K01647] [EC:2.3.3.1]
511277.290  aconitase [KO:K01681] [EC:4.2.1.3]
511575.60  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
506925.319  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
510717.30  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
506337.70  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
510797.10  2-oxoglutarate dehydrogenase subunit [KO:K00164] [EC:1.2.4.2]
506025.60  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
503935.20  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
506701.10  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
509379.10  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
507089.270  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
508933.20  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
507757.70  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
511025.110  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
508933.10  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
507757.60  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
508479.340  succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
507681.20  succinyl-CoA ligase [GDP-forming] beta-chain [KO:K01900] [EC:6.2.1.4 6.2.1.5]
507767.10  succinyl-CoA ligase [GDP-forming] subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
511909.40  succinate dehydrogenase flavoprotein [KO:K00234] [EC:1.3.5.1]
506399.89  succinate dehydrogenase flavoprotein [KO:K00234] [EC:1.3.5.1]
507669.10  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
507257.60  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
510329.270  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
509879.40  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
506937.10  cytosolic malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
510437.40  cytosolic malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
511293.69  glycosomal malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
506195.110  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
507883.109  mitochondrial malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
507883.100  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
506503.69  glycosomal malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
508441.20  glycosomal phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
507547.90  glycosomal phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
507831.70  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
511261.160  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
510421.320  pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
510091.80  pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
510105.170  dihydrolipoamide acetyltransferase precursor [KO:K00627] [EC:2.3.1.12]
509717.20  dihydrolipoamide acetyltransferase precursor [KO:K00627] [EC:2.3.1.12]
511367.70  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tcr00010  Glycolysis / Gluconeogenesis
tcr00053  Ascorbate and aldarate metabolism
tcr00061  Fatty acid biosynthesis
tcr00062  Fatty acid elongation
tcr00071  Fatty acid degradation
tcr00190  Oxidative phosphorylation
tcr00220  Arginine biosynthesis
tcr00250  Alanine, aspartate and glutamate metabolism
tcr00280  Valine, leucine and isoleucine degradation
tcr00350  Tyrosine metabolism
tcr00470  D-Amino acid metabolism
tcr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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