KEGG   PATHWAY: tda00020
Entry
tda00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Teleopsis dalmanni (Malaysian stalk-eyed fly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tda00020  Citrate cycle (TCA cycle)
tda00020

Module
tda_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tda00020]
tda_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tda00020]
tda_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tda00020]
tda_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tda00020]
tda_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tda00020]
Other DBs
GO: 0006099
Organism
Teleopsis dalmanni (Malaysian stalk-eyed fly) [GN:tda]
Gene
119669643  probable citrate synthase 1, mitochondrial [KO:K01647] [EC:2.3.3.1]
119669645  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
119686074  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
119685866  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
119687212  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
119682033  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
119682255  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
119684828  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
119674806  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
119682940  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
119677783  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
119665737  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
119687031  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
119668647  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
119680208  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
119668234  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
119668171  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
119678472  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
119669306  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
119668871  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
119679966  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119670840  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119670969  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119675954  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119689179  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
119689348  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
119684508  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
119685457  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
119685736  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
119685737  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
119678300  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
119677939  succinate dehydrogenase cytochrome b560 subunit-like [KO:K00236]
119677952  succinate dehydrogenase cytochrome b560 subunit-like [KO:K00236]
119680016  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
119669818  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
119669880  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
119688009  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119680236  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
119680428  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
119680484  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
119673949  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
119673950  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
119677738  pyruvate carboxylase, mitochondrial-like isoform X1 [KO:K01958] [EC:6.4.1.1]
119677789  pyruvate carboxylase, mitochondrial-like isoform X1 [KO:K01958] [EC:6.4.1.1]
119677831  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
119685777  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
119670033  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
119670034  pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
119677617  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
119678146  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
119662790  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tda00010  Glycolysis / Gluconeogenesis
tda00053  Ascorbate and aldarate metabolism
tda00061  Fatty acid biosynthesis
tda00062  Fatty acid elongation
tda00071  Fatty acid degradation
tda00190  Oxidative phosphorylation
tda00220  Arginine biosynthesis
tda00250  Alanine, aspartate and glutamate metabolism
tda00280  Valine, leucine and isoleucine degradation
tda00350  Tyrosine metabolism
tda00470  D-Amino acid metabolism
tda00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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