KEGG   PATHWAY: tdc00020
Entry
tdc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Triticum dicoccoides (wild emmer wheat)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tdc00020  Citrate cycle (TCA cycle)
tdc00020

Module
tdc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tdc00020]
tdc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tdc00020]
tdc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tdc00020]
tdc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tdc00020]
tdc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tdc00020]
Other DBs
GO: 0006099
Organism
Triticum dicoccoides (wild emmer wheat) [GN:tdc]
Gene
119312018  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
119316489  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
119320043  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
119303358  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
119275917  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
119329308  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
119295736  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
119299911  ATP-citrate synthase alpha chain protein 3-like [KO:K01648] [EC:2.3.3.8]
119268066  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
119337208  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
119286053  ATP-citrate synthase alpha chain protein 2-like [KO:K01648] [EC:2.3.3.8]
119307771  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
119275814  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
119275815  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
119291945  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
119267948  putative aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
119318579  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
119304043  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
119340709  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
119324861  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
119275675  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
119364855  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
119276426  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
119267782  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
119355698  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
119268531  cytosolic isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
119326437  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
119364611  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
119352388  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
119368852  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
119316823  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
119316982  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
119355488  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
119322385  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
119364110  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
119353088  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
119354973  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
119362172  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
119295037  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
119352862  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
119286701  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
119361900  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
119327113  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
119327734  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
119366632  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
119367246  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
119322044  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
119362832  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
119353970  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
119363215  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
119317149  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119322107  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
119363842  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
119312001  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
119354642  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
119303342  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
119330448  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
119297314  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
119338424  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
119305536  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
119352497  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
119354298  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
119363463  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
119340974  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
119277283  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
119270292  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
119278418  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
119296206  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
119285631  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
119332873  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
119269103  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
119276401  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
119293066  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
119311978  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
119328995  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
119349120  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
119349661  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
119298802  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
119268512  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
119336902  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
119303315  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
119287810  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
119307052  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
119285157  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
119290951  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
119315979  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
119352675  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like isoform X1 [KO:K00161] [EC:1.2.4.1]
119332248  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [KO:K00161] [EC:1.2.4.1]
119322126  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
119361681  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic isoform X1 [KO:K00161] [EC:1.2.4.1]
119340724  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
119311053  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
119327841  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
119311691  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic isoform X1 [KO:K00162] [EC:1.2.4.1]
119298912  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
119302231  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial [KO:K00162] [EC:1.2.4.1]
119303018  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic [KO:K00162] [EC:1.2.4.1]
119337482  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
119307206  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
119309367  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
119344164  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
119344434  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
119344657  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
119345976  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
119328744  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
119328747  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
119277386  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
119315461  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
119315462  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
119315463  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
119315464  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
119315466  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
119300340  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
119301534  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
119336461  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
119322310  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
119308095  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tdc00010  Glycolysis / Gluconeogenesis
tdc00053  Ascorbate and aldarate metabolism
tdc00061  Fatty acid biosynthesis
tdc00062  Fatty acid elongation
tdc00071  Fatty acid degradation
tdc00190  Oxidative phosphorylation
tdc00220  Arginine biosynthesis
tdc00250  Alanine, aspartate and glutamate metabolism
tdc00280  Valine, leucine and isoleucine degradation
tdc00350  Tyrosine metabolism
tdc00470  D-Amino acid metabolism
tdc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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