KEGG   PATHWAY: tee00020
Entry
tee00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Tenderia electrophaga
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tee00020  Citrate cycle (TCA cycle)
tee00020

Module
tee_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tee00020]
tee_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tee00020]
Other DBs
GO: 0006099
Organism
Candidatus Tenderia electrophaga [GN:tee]
Gene
Tel_14205  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
Tel_14325  citrate synthase [KO:K01647] [EC:2.3.3.1]
Tel_04810  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Tel_04835  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Tel_10120  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Tel_06945  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
Tel_06950  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Tel_12345  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Tel_04480  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Tel_06955  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Tel_06930  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
Tel_06925  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
Tel_07510  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
Tel_07515  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Tel_07500  hypothetical protein [KO:K00241]
Tel_07505  succinate dehydrogenase [KO:K00242]
Tel_09495  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
Tel_09500  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
Tel_04470  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
Tel_04475  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Tel_11805  hypothetical protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tee00010  Glycolysis / Gluconeogenesis
tee00053  Ascorbate and aldarate metabolism
tee00061  Fatty acid biosynthesis
tee00071  Fatty acid degradation
tee00190  Oxidative phosphorylation
tee00220  Arginine biosynthesis
tee00250  Alanine, aspartate and glutamate metabolism
tee00280  Valine, leucine and isoleucine degradation
tee00350  Tyrosine metabolism
tee00470  D-Amino acid metabolism
tee00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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