KEGG   PATHWAY: tej00020
Entry
tej00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tessaracoccus palaemonis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tej00020  Citrate cycle (TCA cycle)
tej00020

Module
tej_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tej00020]
tej_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tej00020]
tej_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tej00020]
tej_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tej00020]
Other DBs
GO: 0006099
Organism
Tessaracoccus palaemonis [GN:tej]
Gene
KDB89_08315  citrate synthase [KO:K01647] [EC:2.3.3.1]
KDB89_13350  citrate synthase [KO:K01647] [EC:2.3.3.1]
KDB89_07665  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KDB89_10930  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KDB89_06270  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KDB89_02235  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KDB89_07480  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KDB89_10625  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KDB89_10630  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KDB89_03955  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KDB89_03950  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KDB89_12355  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
KDB89_05080  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KDB89_05085  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KDB89_05075  succinate dehydrogenase cytochrome b subunit [KO:K00241]
KDB89_13280  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KDB89_12915  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KDB89_01960  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KDB89_03995  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KDB89_02540  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KDB89_07235  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KDB89_12135  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KDB89_08125  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KDB89_09835  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
KDB89_02230  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
KDB89_02595  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tej00010  Glycolysis / Gluconeogenesis
tej00053  Ascorbate and aldarate metabolism
tej00061  Fatty acid biosynthesis
tej00071  Fatty acid degradation
tej00190  Oxidative phosphorylation
tej00220  Arginine biosynthesis
tej00250  Alanine, aspartate and glutamate metabolism
tej00280  Valine, leucine and isoleucine degradation
tej00350  Tyrosine metabolism
tej00470  D-Amino acid metabolism
tej00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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