KEGG   PATHWAY: tet00020
Entry
tet00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tetrahymena thermophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tet00020  Citrate cycle (TCA cycle)
tet00020

Module
tet_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tet00020]
tet_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tet00020]
tet_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tet00020]
Other DBs
GO: 0006099
Organism
Tetrahymena thermophila [GN:tet]
Gene
TTHERM_00049070  peroxisomal (Per) like protein [KO:K01647] [EC:2.3.3.1]
TTHERM_00383610  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
TTHERM_00318570  citrate synthase I [KO:K01647] [EC:2.3.3.1]
TTHERM_00529790  citrate synthase I [KO:K01647] [EC:2.3.3.1]
TTHERM_00191800  cytoplasmic-like aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TTHERM_00037470  cytoplasmic-like aconitate hydratase [KO:K01681] [EC:4.2.1.3]
TTHERM_00196200  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TTHERM_00794110  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
TTHERM_00723390  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
TTHERM_00344030  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
TTHERM_00268070  oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
TTHERM_00193640  oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
TTHERM_00105450  2-oxoglutarate dehydrogenase complex protein, putative [KO:K00658] [EC:2.3.1.61]
TTHERM_00043870  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
TTHERM_00068140  succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
TTHERM_00079540  succinyl-CoA ligase [GDP-forming] subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
TTHERM_00437600  succinyl-CoA ligase [GDP-forming] subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
TTHERM_00535260  succinyl-CoA ligase [GDP-forming] subunit beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
TTHERM_00047080  succinate dehydrogenase [ubiquinone] flavoprotein subunit [KO:K00234] [EC:1.3.5.1]
TTHERM_00241700  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00235] [EC:1.3.5.1]
TTHERM_01308050  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
TTHERM_00052260  cytoplasmic and cytosolic malate dehydrogenase family protein [KO:K00025] [EC:1.1.1.37]
TTHERM_00030190  cytoplasmic and cytosolic malate dehydrogenase family protein [KO:K00025] [EC:1.1.1.37]
TTHERM_00237500  cytoplasmic and cytosolic malate dehydrogenase family protein [KO:K00025] [EC:1.1.1.37]
TTHERM_01029960  cytoplasmic and cytosolic malate dehydrogenase family protein [KO:K00026] [EC:1.1.1.37]
TTHERM_00420030  phosphoenolpyruvate carboxykinase [ATP] protein [KO:K01610] [EC:4.1.1.49]
TTHERM_00193230  pyruvate dehydrogenase E1 alpha subunit [KO:K00161] [EC:1.2.4.1]
TTHERM_000784559  pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
TTHERM_00979780  pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
TTHERM_00530750  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tet00010  Glycolysis / Gluconeogenesis
tet00053  Ascorbate and aldarate metabolism
tet00061  Fatty acid biosynthesis
tet00062  Fatty acid elongation
tet00071  Fatty acid degradation
tet00190  Oxidative phosphorylation
tet00220  Arginine biosynthesis
tet00250  Alanine, aspartate and glutamate metabolism
tet00280  Valine, leucine and isoleucine degradation
tet00350  Tyrosine metabolism
tet00470  D-Amino acid metabolism
tet00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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