KEGG   PATHWAY: tfd00020
Entry
tfd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tachysurus fulvidraco (yellow catfish)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tfd00020  Citrate cycle (TCA cycle)
tfd00020

Module
tfd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tfd00020]
tfd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tfd00020]
tfd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tfd00020]
Other DBs
GO: 0006099
Organism
Tachysurus fulvidraco (yellow catfish) [GN:tfd]
Gene
113641846  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
113662180  ATP-citrate synthase-like isoform X3 [KO:K01648] [EC:2.3.3.8]
113652150  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
113637176  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
113657419  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
113660922  idh2; isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
113641031  idh1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
113641733  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
113641877  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
113634375  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
113660137  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
113638393  ogdhb; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
113638910  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X3 [KO:K00164] [EC:1.2.4.2]
113639805  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
113659563  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
113660030  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
113650039  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
113648576  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113651295  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113653851  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
113662124  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
113660453  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
113634067  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
113663570  mdh1aa; malate dehydrogenase 1Aa, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
113640496  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
113650282  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
113662088  pcxa; pyruvate carboxylase a [KO:K01958] [EC:6.4.1.1]
113640317  pcxb; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
113648560  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
113661455  pdha1b; pyruvate dehydrogenase E1 subunit alpha 1b [KO:K00161] [EC:1.2.4.1]
113663982  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a isoform X1 [KO:K00161] [EC:1.2.4.1]
113639103  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
113634951  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tfd00010  Glycolysis / Gluconeogenesis
tfd00053  Ascorbate and aldarate metabolism
tfd00061  Fatty acid biosynthesis
tfd00062  Fatty acid elongation
tfd00071  Fatty acid degradation
tfd00190  Oxidative phosphorylation
tfd00220  Arginine biosynthesis
tfd00250  Alanine, aspartate and glutamate metabolism
tfd00280  Valine, leucine and isoleucine degradation
tfd00350  Tyrosine metabolism
tfd00470  D-Amino acid metabolism
tfd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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