KEGG   PATHWAY: tfn00020
Entry
tfn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Trachypithecus francoisi (Francois's langur)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tfn00020  Citrate cycle (TCA cycle)
tfn00020

Module
tfn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tfn00020]
tfn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tfn00020]
tfn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tfn00020]
tfn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tfn00020]
tfn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tfn00020]
Other DBs
GO: 0006099
Organism
Trachypithecus francoisi (Francois's langur) [GN:tfn]
Gene
117089937  CS; citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
117066983  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
117096413  ACO2; aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
117098275  LOW QUALITY PROTEIN: aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
117098703  ACO1; cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
117070221  IDH2; isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
117094592  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
117098828  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
117062480  IDH3G; LOW QUALITY PROTEIN: isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
117068555  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
117073308  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
117082208  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
117069327  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
117073372  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
117062111  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
117089612  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117089613  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117063269  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117083108  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
117064660  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
117064675  SDHA; LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
117064676  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
117062944  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
117093237  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
117074342  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
117092766  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
117074969  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
117073294  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
117070004  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
117062307  LOW QUALITY PROTEIN: fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
117074590  FH; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
117099720  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
117069587  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
117072477  MDH2; malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
117074680  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
117081547  PC; pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
117068976  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
117069918  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
117078518  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
117086397  PDHA2; pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial [KO:K00161] [EC:1.2.4.1]
117083059  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
117065165  DLAT; LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tfn00010  Glycolysis / Gluconeogenesis
tfn00053  Ascorbate and aldarate metabolism
tfn00061  Fatty acid biosynthesis
tfn00062  Fatty acid elongation
tfn00071  Fatty acid degradation
tfn00190  Oxidative phosphorylation
tfn00220  Arginine biosynthesis
tfn00250  Alanine, aspartate and glutamate metabolism
tfn00280  Valine, leucine and isoleucine degradation
tfn00350  Tyrosine metabolism
tfn00470  D-Amino acid metabolism
tfn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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