KEGG   PATHWAY: thw00020
Entry
thw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thioclava nitratireducens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
thw00020  Citrate cycle (TCA cycle)
thw00020

Module
thw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:thw00020]
thw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:thw00020]
thw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:thw00020]
thw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:thw00020]
thw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:thw00020]
Other DBs
GO: 0006099
Organism
Thioclava nitratireducens [GN:thw]
Gene
BMG03_14360  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BMG03_12295  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BMG03_11160  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
BMG03_11165  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BMG03_06630  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BMG03_06625  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BMG03_07570  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMG03_08915  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMG03_06615  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMG03_06635  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BMG03_06640  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BMG03_09035  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BMG03_06700  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BMG03_06710  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BMG03_06690  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BMG03_06695  succinate dehydrogenase [KO:K00242]
BMG03_10255  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BMG03_06655  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BMG03_03940  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BMG03_15115  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BMG03_18410  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BMG03_12065  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BMG03_12070  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BMG03_09515  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BMG03_12075  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
thw00010  Glycolysis / Gluconeogenesis
thw00053  Ascorbate and aldarate metabolism
thw00061  Fatty acid biosynthesis
thw00071  Fatty acid degradation
thw00190  Oxidative phosphorylation
thw00220  Arginine biosynthesis
thw00250  Alanine, aspartate and glutamate metabolism
thw00280  Valine, leucine and isoleucine degradation
thw00350  Tyrosine metabolism
thw00470  D-Amino acid metabolism
thw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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