KEGG   PATHWAY: tmar00020
Entry
tmar00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Tenacibaculum maritimum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tmar00020  Citrate cycle (TCA cycle)
tmar00020

Module
tmar_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tmar00020]
tmar_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tmar00020]
tmar_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tmar00020]
tmar_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tmar00020]
tmar_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tmar00020]
Other DBs
GO: 0006099
Organism
Tenacibaculum maritimum [GN:tmar]
Gene
MARIT_2336  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MARIT_1332  acnB; bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MARIT_2139  icd; Monomeric isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MARIT_3069  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
MARIT_3070  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
MARIT_1960  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component [KO:K00658] [EC:2.3.1.61]
MARIT_2062  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MARIT_0782  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MARIT_1506  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
MARIT_2292  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
MARIT_3013  sdhA; Succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MARIT_3012  sdhB; Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
MARIT_3014  sdhC; Succinate dehydrogenase cytochrome b subunit [KO:K00241]
MARIT_1906  fumC; fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
MARIT_0889  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MARIT_1970  pycA; Pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MARIT_0656  pck; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MARIT_2043  pdhA; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MARIT_2861  pdhB; Pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
MARIT_2044  pdhC; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tmar00010  Glycolysis / Gluconeogenesis
tmar00053  Ascorbate and aldarate metabolism
tmar00061  Fatty acid biosynthesis
tmar00071  Fatty acid degradation
tmar00190  Oxidative phosphorylation
tmar00220  Arginine biosynthesis
tmar00250  Alanine, aspartate and glutamate metabolism
tmar00280  Valine, leucine and isoleucine degradation
tmar00350  Tyrosine metabolism
tmar00470  D-Amino acid metabolism
tmar00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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