KEGG   PATHWAY: tnl00020
Entry
tnl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Trichoplusia ni (cabbage looper)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tnl00020  Citrate cycle (TCA cycle)
tnl00020

Module
tnl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tnl00020]
tnl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tnl00020]
tnl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tnl00020]
Other DBs
GO: 0006099
Organism
Trichoplusia ni (cabbage looper) [GN:tnl]
Gene
113496076  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
113505697  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
113491646  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
113494725  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
113504438  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
113507131  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
113492710  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
113502727  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
113493780  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
113495386  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
113504632  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
113495459  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
113492358  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
113498769  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
113502406  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
113492603  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113493526  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
113504226  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
113493067  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
113500096  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
113494956  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
113504214  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
113505240  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
113504791  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
113495603  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
113496354  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
113497832  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
113508456  uncharacterized protein LOC113508456 [KO:K00026] [EC:1.1.1.37]
113508457  uncharacterized protein LOC113508457 [KO:K00026] [EC:1.1.1.37]
113495992  probable malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
113507632  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
113498894  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
113503974  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
113503833  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
113503835  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
113494263  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
113499842  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
113499844  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
113496524  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
113507738  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tnl00010  Glycolysis / Gluconeogenesis
tnl00053  Ascorbate and aldarate metabolism
tnl00061  Fatty acid biosynthesis
tnl00062  Fatty acid elongation
tnl00071  Fatty acid degradation
tnl00190  Oxidative phosphorylation
tnl00220  Arginine biosynthesis
tnl00250  Alanine, aspartate and glutamate metabolism
tnl00280  Valine, leucine and isoleucine degradation
tnl00350  Tyrosine metabolism
tnl00470  D-Amino acid metabolism
tnl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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