KEGG   PATHWAY: tov00020
Entry
tov00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tenacibaculum ovolyticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tov00020  Citrate cycle (TCA cycle)
tov00020

Module
tov_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tov00020]
tov_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tov00020]
tov_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tov00020]
tov_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tov00020]
tov_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tov00020]
Other DBs
GO: 0006099
Organism
Tenacibaculum ovolyticum [GN:tov]
Gene
PG911_04585  citrate synthase [KO:K01647] [EC:2.3.3.1]
PG911_11965  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PG911_11210  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PG911_01595  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PG911_11070  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
PG911_01600  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PG911_11885  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PG911_02750  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PG911_09755  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PG911_05085  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PG911_18665  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PG911_18670  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PG911_18660  succinate dehydrogenase cytochrome b subunit [KO:K00241]
PG911_06525  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PG911_03440  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
PG911_13155  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
PG911_03415  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
PG911_15395  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
PG911_14450  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
PG911_16980  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
PG911_14455  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tov00010  Glycolysis / Gluconeogenesis
tov00053  Ascorbate and aldarate metabolism
tov00061  Fatty acid biosynthesis
tov00071  Fatty acid degradation
tov00190  Oxidative phosphorylation
tov00220  Arginine biosynthesis
tov00250  Alanine, aspartate and glutamate metabolism
tov00280  Valine, leucine and isoleucine degradation
tov00350  Tyrosine metabolism
tov00470  D-Amino acid metabolism
tov00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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