KEGG   PATHWAY: tpec00020
Entry
tpec00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Trueperella pecoris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tpec00020  Citrate cycle (TCA cycle)
tpec00020

Module
tpec_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tpec00020]
tpec_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tpec00020]
tpec_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tpec00020]
tpec_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tpec00020]
Other DBs
GO: 0006099
Organism
Trueperella pecoris [GN:tpec]
Gene
HLG82_01735  citrate synthase [KO:K01647] [EC:2.3.3.1]
HLG82_05240  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HLG82_01630  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HLG82_07295  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
HLG82_05445  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HLG82_02630  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HLG82_02625  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HLG82_06930  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HLG82_02455  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HLG82_06925  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HLG82_02460  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HLG82_06935  succinate dehydrogenase cytochrome b subunit [KO:K00241]
HLG82_02450  succinate dehydrogenase cytochrome b subunit [KO:K00241]
HLG82_03820  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HLG82_02555  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HLG82_02670  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HLG82_08600  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
HLG82_05575  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HLG82_05450  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tpec00010  Glycolysis / Gluconeogenesis
tpec00053  Ascorbate and aldarate metabolism
tpec00061  Fatty acid biosynthesis
tpec00190  Oxidative phosphorylation
tpec00220  Arginine biosynthesis
tpec00250  Alanine, aspartate and glutamate metabolism
tpec00280  Valine, leucine and isoleucine degradation
tpec00350  Tyrosine metabolism
tpec00470  D-Amino acid metabolism
tpec00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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