KEGG   PATHWAY: tpro00020
Entry
tpro00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salipiger profundus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tpro00020  Citrate cycle (TCA cycle)
tpro00020

Module
tpro_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tpro00020]
tpro_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tpro00020]
tpro_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tpro00020]
tpro_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tpro00020]
tpro_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tpro00020]
Other DBs
GO: 0006099
Organism
Salipiger profundus [GN:tpro]
Gene
Ga0080559_TMP4253  citrate synthase [KO:K01647] [EC:2.3.3.1]
Ga0080559_TMP3402  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Ga0080559_TMP1750  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Ga0080559_TMP3544  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Ga0080559_TMP1144  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Ga0080559_TMP1145  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Ga0080559_TMP1691  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ga0080559_TMP4733  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ga0080559_TMP1150  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ga0080559_TMP1143  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Ga0080559_TMP1141  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Ga0080559_TMP2908  succinyl-CoA:acetate CoA-transferase [KO:K18118] [EC:2.8.3.18]
Ga0080559_TMP1128  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Ga0080559_TMP1124  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Ga0080559_TMP1130  succinate dehydrogenase subunit C [KO:K00241]
Ga0080559_TMP1129  succinate dehydrogenase / fumarate reductase membrane anchor subunit [KO:K00242]
Ga0080559_TMP3793  fumarase, class II [KO:K01679] [EC:4.2.1.2]
Ga0080559_TMP1139  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Ga0080559_TMP727  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Ga0080559_TMP2650  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Ga0080559_TMP605  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
Ga0080559_TMP606  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
Ga0080559_TMP608  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tpro00010  Glycolysis / Gluconeogenesis
tpro00053  Ascorbate and aldarate metabolism
tpro00061  Fatty acid biosynthesis
tpro00071  Fatty acid degradation
tpro00190  Oxidative phosphorylation
tpro00220  Arginine biosynthesis
tpro00250  Alanine, aspartate and glutamate metabolism
tpro00280  Valine, leucine and isoleucine degradation
tpro00350  Tyrosine metabolism
tpro00470  D-Amino acid metabolism
tpro00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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