KEGG   PATHWAY: tros00020
Entry
tros00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Triplophysa rosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tros00020  Citrate cycle (TCA cycle)
tros00020

Module
tros_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tros00020]
tros_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tros00020]
tros_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tros00020]
tros_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tros00020]
tros_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tros00020]
Other DBs
GO: 0006099
Organism
Triplophysa rosa [GN:tros]
Gene
130544906  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
130562108  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
130552391  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
130569027  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
130555516  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
130563111  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
130544943  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
130551861  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
130569990  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
130545147  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
130546021  ogdhb; 2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
130559377  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
130567613  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
130560081  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
130551749  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
130552682  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
130571103  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
130557165  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
130567461  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
130548789  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
130555069  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
130565282  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
130566251  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
130553452  mdh1aa; LOW QUALITY PROTEIN: malate dehydrogenase 1Aa, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
130560574  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
130546071  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
130569918  pcxa; pyruvate carboxylase a [KO:K01958] [EC:6.4.1.1]
130549411  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
130547219  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
130556883  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
130547986  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a isoform X1 [KO:K00161] [EC:1.2.4.1]
130548790  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
130570043  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tros00010  Glycolysis / Gluconeogenesis
tros00053  Ascorbate and aldarate metabolism
tros00061  Fatty acid biosynthesis
tros00062  Fatty acid elongation
tros00071  Fatty acid degradation
tros00190  Oxidative phosphorylation
tros00220  Arginine biosynthesis
tros00250  Alanine, aspartate and glutamate metabolism
tros00280  Valine, leucine and isoleucine degradation
tros00350  Tyrosine metabolism
tros00470  D-Amino acid metabolism
tros00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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