KEGG   PATHWAY: tsi00020
Entry
tsi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thermococcus sibiricus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tsi00020  Citrate cycle (TCA cycle)
tsi00020

Module
tsi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tsi00020]
tsi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tsi00020]
Other DBs
GO: 0006099
Organism
Thermococcus sibiricus [GN:tsi]
Gene
TSIB_1468  2-ketoglutarate:ferredoxin oxidoreductase 2 (KGOR), subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TSIB_1471  2-ketoglutarate:ferredoxin oxidoreductase (KGOR), subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TSIB_1902  2-oxoacid:ferredoxin oxidoreductase, subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TSIB_1467  2-ketoglutarate ferredoxin oxidoreductase 2 (KGOR), subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TSIB_1470  2-ketoglutarate:ferredoxin oxidoreductase (KGOR), subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TSIB_1901  2-oxoacid:ferredoxin oxidoreductase, subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TSIB_1466  2-oxoglutarate ferredoxin oxidoreductase 2 (KGOR), subunit gamma [KO:K00177] [EC:1.2.7.3]
TSIB_1469  2-ketoglutarate:ferredoxin oxidoreductase (KGOR), subunit gamma [KO:K00177] [EC:1.2.7.3]
TSIB_1472  2-ketoglutarate:ferredoxin oxidoreductase and 2-oxoglutarate ferredoxin oxidoreductase 2 (KGOR), subunit delta [KO:K00176] [EC:1.2.7.3]
TSIB_1633  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
TSIB_0231  Oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
TSIB_0151  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
TSIB_1379  Pyruvate:ferredoxin oxidoreductase (POR), subunit alpha [KO:K00169] [EC:1.2.7.1]
TSIB_1378  Pyruvate:ferredoxin oxidoreductase (POR), subunit beta [KO:K00170] [EC:1.2.7.1]
TSIB_1384  pyruvate:ferredoxin oxidoreductase (POR) and 2-ketoisovalerate:ferredoxin oxidoreductase (VOR) subunit gamma [KO:K00189] [EC:1.2.7.7 1.2.7.1]
TSIB_1380  Pyruvate:ferredoxin oxidoreductase (POR), subunit delta [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tsi00010  Glycolysis / Gluconeogenesis
tsi00061  Fatty acid biosynthesis
tsi00071  Fatty acid degradation
tsi00190  Oxidative phosphorylation
tsi00220  Arginine biosynthesis
tsi00250  Alanine, aspartate and glutamate metabolism
tsi00280  Valine, leucine and isoleucine degradation
tsi00350  Tyrosine metabolism
tsi00470  D-Amino acid metabolism
tsi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system