KEGG   PATHWAY: tsig00020
Entry
tsig00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Tenacibaculum singaporense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tsig00020  Citrate cycle (TCA cycle)
tsig00020

Module
tsig_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tsig00020]
tsig_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tsig00020]
tsig_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tsig00020]
tsig_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tsig00020]
tsig_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tsig00020]
Other DBs
GO: 0006099
Organism
Tenacibaculum singaporense [GN:tsig]
Gene
D6T69_13755  citrate synthase [KO:K01647] [EC:2.3.3.1]
D6T69_08510  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
D6T69_08505  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
D6T69_07335  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
D6T69_01070  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
D6T69_01065  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
D6T69_07455  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
D6T69_11305  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D6T69_15140  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
D6T69_09570  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
D6T69_12905  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
D6T69_02925  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
D6T69_02920  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
D6T69_02930  succinate dehydrogenase [KO:K00241]
D6T69_08980  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
D6T69_14875  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
D6T69_04340  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
D6T69_15390  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
D6T69_13175  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
D6T69_04505  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
D6T69_13180  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tsig00010  Glycolysis / Gluconeogenesis
tsig00053  Ascorbate and aldarate metabolism
tsig00061  Fatty acid biosynthesis
tsig00071  Fatty acid degradation
tsig00190  Oxidative phosphorylation
tsig00220  Arginine biosynthesis
tsig00250  Alanine, aspartate and glutamate metabolism
tsig00280  Valine, leucine and isoleucine degradation
tsig00350  Tyrosine metabolism
tsig00470  D-Amino acid metabolism
tsig00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system