KEGG   PATHWAY: tss00020
Entry
tss00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Telopea speciosissima (New South Wales waratah)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tss00020  Citrate cycle (TCA cycle)
tss00020

Module
tss_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tss00020]
tss_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tss00020]
tss_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tss00020]
Other DBs
GO: 0006099
Organism
Telopea speciosissima (New South Wales waratah) [GN:tss]
Gene
122651871  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
122642972  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
122656988  ATP-citrate synthase alpha chain protein 1 isoform X1 [KO:K01648] [EC:2.3.3.8]
122658724  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
122658909  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
122671269  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
122671565  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
122661448  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
122639836  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
122641813  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
122670846  isocitrate dehydrogenase [NADP]-like isoform X1 [KO:K00031] [EC:1.1.1.42]
122651747  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
122668854  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
122647192  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
122652186  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
122642693  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
122667697  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
122650099  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122640741  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122646343  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
122639651  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
122669049  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
122659909  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
122654392  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
122667729  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
122646012  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122646482  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122642562  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122655878  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122661442  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
122654780  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122670434  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122669144  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
122658045  fumarate hydratase 1, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
122659290  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
122663721  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
122642032  malate dehydrogenase 2, cytoplasmic [KO:K00025] [EC:1.1.1.37]
122657580  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
122662027  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
122651838  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122640805  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122667545  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
122660159  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
122662537  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
122662539  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
122672003  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
122638916  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like isoform X1 [KO:K00161] [EC:1.2.4.1]
122664147  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
122655868  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
122672770  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
122664354  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
122656105  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
122671587  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
122661808  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
122664595  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
122667137  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tss00010  Glycolysis / Gluconeogenesis
tss00053  Ascorbate and aldarate metabolism
tss00061  Fatty acid biosynthesis
tss00062  Fatty acid elongation
tss00071  Fatty acid degradation
tss00190  Oxidative phosphorylation
tss00220  Arginine biosynthesis
tss00250  Alanine, aspartate and glutamate metabolism
tss00280  Valine, leucine and isoleucine degradation
tss00350  Tyrosine metabolism
tss00470  D-Amino acid metabolism
tss00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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