KEGG   PATHWAY: tss04136
Entry
tss04136                    Pathway                                
Name
Autophagy - other - Telopea speciosissima (New South Wales waratah)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
tss04136  Autophagy - other
tss04136

Other DBs
GO: 0006914
Organism
Telopea speciosissima (New South Wales waratah) [GN:tss]
Gene
122670956  regulatory-associated protein of TOR 1-like isoform X1 [KO:K07204]
122654701  regulatory-associated protein of TOR 1-like isoform X1 [KO:K07204]
122660173  serine/threonine-protein kinase TOR [KO:K07203] [EC:2.7.11.1]
122658916  target of rapamycin complex subunit LST8 isoform X1 [KO:K08266]
122661683  serine/threonine-protein kinase ATG1c-like isoform X1 [KO:K08269] [EC:2.7.11.1]
122652094  serine/threonine-protein kinase ATG1c-like isoform X1 [KO:K08269] [EC:2.7.11.1]
122647307  autophagy-related protein 13a isoform X1 [KO:K08331]
122664735  autophagy-related protein 13b [KO:K08331]
122660388  autophagy-related protein 101 isoform X1 [KO:K19730]
122646058  autophagy-related protein 11-like isoform X1 [KO:K08330]
122655759  autophagy-related protein 11-like [KO:K08330]
122664277  PP2A regulatory subunit TAP46-like isoform X1 [KO:K17606]
122671514  serine/threonine-protein phosphatase PP2A catalytic subunit-like [KO:K04382] [EC:3.1.3.16]
122642368  serine/threonine-protein phosphatase PP2A-2 catalytic subunit [KO:K04382] [EC:3.1.3.16]
122655678  serine/threonine-protein phosphatase PP2A catalytic subunit [KO:K04382] [EC:3.1.3.16]
122642572  serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like isoform X1 [KO:K04382] [EC:3.1.3.16]
122671658  autophagy-related protein 9-like [KO:K17907]
122654369  autophagy-related protein 9-like [KO:K17907]
122658664  autophagy-related protein 2 [KO:K17906]
122657297  autophagy-related protein 18b isoform X1 [KO:K17908]
122670863  beclin-1-like protein [KO:K08334]
122654397  phosphatidylinositol 3-kinase, root isoform [KO:K00914] [EC:2.7.1.137]
122661744  serine/threonine-protein kinase VPS15-like [KO:K08333] [EC:2.7.11.1]
122652338  serine/threonine-protein kinase VPS15-like [KO:K08333] [EC:2.7.11.1]
122653708  ubiquitin-like protein ATG12 [KO:K08336]
122666114  autophagy protein 5 isoform X1 [KO:K08339]
122669348  autophagy-related protein 16 isoform X1 [KO:K17890]
122651898  ubiquitin-like modifier-activating enzyme atg7 [KO:K08337]
122641332  ubiquitin-like-conjugating enzyme ATG10 isoform X1 [KO:K17888]
122666151  autophagy-related protein 3 [KO:K08343]
122644121  autophagy-related protein 8C-like isoform X1 [KO:K08341]
122670653  autophagy-related protein 8i [KO:K08341]
122658060  autophagy-related protein 8i-like isoform X1 [KO:K08341]
122649193  autophagy-related protein 8f-like [KO:K08341]
122664359  autophagy-related protein 8f [KO:K08341]
122640085  autophagy-related protein 8C-like [KO:K08341]
122669045  cysteine protease ATG4-like [KO:K08342] [EC:3.4.22.-]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   
LinkDB

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