KEGG   PATHWAY: tst00030
Entry
tst00030                    Pathway                                
Name
Pentose phosphate pathway - Trachemys scripta elegans (red-eared slider)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tst00030  Pentose phosphate pathway
tst00030

Module
tst_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:tst00030]
tst_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:tst00030]
tst_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:tst00030]
tst_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:tst00030]
Other DBs
GO: 0006098
Organism
Trachemys scripta elegans (red-eared slider) [GN:tst]
Gene
117886494  GPI; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
117888539  PGLS; 6-phosphogluconolactonase isoform X1 [KO:K01057] [EC:3.1.1.31]
117867793  H6PD; GDH/6PGL endoplasmic bifunctional protein isoform X1 [KO:K13937] [EC:1.1.1.47 3.1.1.31]
117867960  PGD; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
117885246  RPE; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
117880048  TKT; transketolase isoform X1 [KO:K00615] [EC:2.2.1.1]
117877360  TALDO1; transaldolase [KO:K00616] [EC:2.2.1.2]
117878075  RPIA; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
117867549  SHPK; sedoheptulokinase isoform X1 [KO:K11214] [EC:2.7.1.14]
117883010  DERA; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
117874549  RBKS; ribokinase isoform X1 [KO:K00852] [EC:2.7.1.15]
117881221  PGM1; phosphoglucomutase-1 isoform X1 [KO:K01835] [EC:5.4.2.2]
117878029  PGM2; phosphoglucomutase-2 isoform X1 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
117869906  PRPS2; ribose-phosphate pyrophosphokinase 2 isoform X1 [KO:K00948] [EC:2.7.6.1]
117882798  PRPS1; ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
117870589  regucalcin-like [KO:K01053] [EC:3.1.1.17]
117870611  regucalcin [KO:K01053] [EC:3.1.1.17]
117879306  IDNK; probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
117880329  GLYCTK; glycerate kinase isoform X1 [KO:K11529] [EC:2.7.1.165]
117878679  ALDOB; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
117878987  FBP1; fructose-1,6-bisphosphatase 1 isoform X1 [KO:K03841] [EC:3.1.3.11]
117879455  fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
117888596  PFKM; ATP-dependent 6-phosphofructokinase, muscle type isoform X1 [KO:K00850] [EC:2.7.1.11]
117882601  PFKL; ATP-dependent 6-phosphofructokinase, liver type isoform X1 [KO:K00850] [EC:2.7.1.11]
117872058  PFKP; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
tst00010  Glycolysis / Gluconeogenesis
tst00040  Pentose and glucuronate interconversions
tst00052  Galactose metabolism
tst00230  Purine metabolism
tst00240  Pyrimidine metabolism
tst00340  Histidine metabolism
tst00630  Glyoxylate and dicarboxylate metabolism
tst00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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