KEGG   PATHWAY: ttg00020
Entry
ttg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tenacibaculum tangerinum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ttg00020  Citrate cycle (TCA cycle)
ttg00020

Module
ttg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ttg00020]
ttg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ttg00020]
ttg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ttg00020]
ttg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ttg00020]
ttg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ttg00020]
Other DBs
GO: 0006099
Organism
Tenacibaculum tangerinum [GN:ttg]
Gene
P8625_15520  citrate synthase [KO:K01647] [EC:2.3.3.1]
P8625_02130  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
P8625_01430  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
P8625_02985  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
P8625_09900  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
P8625_04435  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
P8625_09905  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
P8625_14380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
P8625_04130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
P8625_02640  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
P8625_00105  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
P8625_11270  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
P8625_11275  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
P8625_11265  succinate dehydrogenase cytochrome b subunit [KO:K00241]
P8625_03965  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
P8625_14795  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
P8625_02255  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
P8625_13585  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
P8625_13265  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
P8625_10930  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
P8625_05215  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
P8625_08585  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
P8625_05220  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ttg00010  Glycolysis / Gluconeogenesis
ttg00053  Ascorbate and aldarate metabolism
ttg00061  Fatty acid biosynthesis
ttg00071  Fatty acid degradation
ttg00190  Oxidative phosphorylation
ttg00220  Arginine biosynthesis
ttg00250  Alanine, aspartate and glutamate metabolism
ttg00280  Valine, leucine and isoleucine degradation
ttg00350  Tyrosine metabolism
ttg00470  D-Amino acid metabolism
ttg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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