KEGG   PATHWAY: tua00020
Entry
tua00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Triticum urartu (red wild einkorn wheat)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tua00020  Citrate cycle (TCA cycle)
tua00020

Module
tua_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tua00020]
tua_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tua00020]
tua_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tua00020]
tua_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tua00020]
tua_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tua00020]
Other DBs
GO: 0006099
Organism
Triticum urartu (red wild einkorn wheat) [GN:tua]
Gene
125510774  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
125517598  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
125530651  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
125551306  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
125520618  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
125508108  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
125543959  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
125530875  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
125531209  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
125521472  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
125543650  putative aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
125531324  isocitrate dehydrogenase [NADP]-like isoform X1 [KO:K00031] [EC:1.1.1.42]
125538972  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
125544252  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
125513217  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125513390  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125513537  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125513539  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125534519  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125538723  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
125508519  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
125535452  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
125537920  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
125550591  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
125550592  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
125550595  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
125535210  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
125546125  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
125550834  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
125551018  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
125551083  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
125536519  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
125513562  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
125510763  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
125537386  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
125537391  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
125518009  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
125556048  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
125536824  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
125536828  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
125536831  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
125545915  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
125515267  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
125551708  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
125531389  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
125506937  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
125525771  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
125530156  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
125530273  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
125520151  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
125544281  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
125544286  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
125552250  phosphoenolpyruvate carboxykinase (ATP) isoform X1 [KO:K01610] [EC:4.1.1.49]
125514661  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
125534992  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
125523132  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [KO:K00161] [EC:1.2.4.1]
125507651  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
125509981  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial [KO:K00162] [EC:1.2.4.1]
125510514  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic [KO:K00162] [EC:1.2.4.1]
125519983  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
125524992  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
125509279  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
125511164  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
125530031  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
125513274  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
125530999  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
125518934  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
125523022  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
125508390  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tua00010  Glycolysis / Gluconeogenesis
tua00053  Ascorbate and aldarate metabolism
tua00061  Fatty acid biosynthesis
tua00062  Fatty acid elongation
tua00071  Fatty acid degradation
tua00190  Oxidative phosphorylation
tua00220  Arginine biosynthesis
tua00250  Alanine, aspartate and glutamate metabolism
tua00280  Valine, leucine and isoleucine degradation
tua00350  Tyrosine metabolism
tua00470  D-Amino acid metabolism
tua00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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