KEGG   PATHWAY: tup00020
Entry
tup00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Tupaia chinensis (Chinese tree shrew)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tup00020  Citrate cycle (TCA cycle)
tup00020

Module
tup_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tup00020]
tup_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:tup00020]
tup_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tup00020]
tup_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:tup00020]
tup_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tup00020]
Other DBs
GO: 0006099
Organism
Tupaia chinensis (Chinese tree shrew) [GN:tup]
Gene
102475373  CS; citrate synthase [KO:K01647] [EC:2.3.3.1]
102487454  ACLY; ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
102471910  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
102501113  ACO2; aconitase 2 [KO:K01681] [EC:4.2.1.3]
102469344  IDH1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
102485330  IDH2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
102479509  IDH3A; isocitrate dehydrogenase 3 (NAD(+)) alpha [KO:K00030] [EC:1.1.1.41]
102494733  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
102493633  IDH3B; isocitrate dehydrogenase 3 (NAD(+)) beta [KO:K00030] [EC:1.1.1.41]
102475641  IDH3G; isocitrate dehydrogenase 3 (NAD(+)) gamma [KO:K00030] [EC:1.1.1.41]
102495849  OGDH; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
102489891  OGDHL; oxoglutarate dehydrogenase-like [KO:K00164] [EC:1.2.4.2]
102489936  DLST; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
102470087  DLD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
102499403  succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102469704  SUCLG1; succinate-CoA ligase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
102491906  SUCLA2; succinate-CoA ligase ADP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102501473  SUCLG2; succinate-CoA ligase GDP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
102502720  SDHA; succinate dehydrogenase complex flavoprotein subunit A [KO:K00234] [EC:1.3.5.1]
102480936  SDHB; succinate dehydrogenase complex iron sulfur subunit B [KO:K00235] [EC:1.3.5.1]
102502200  SDHC; succinate dehydrogenase complex subunit C [KO:K00236]
102480188  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
102479916  FH; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
102501679  MDH1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
102499069  MDH2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
102478911  PC; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
102496619  PCK1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
102488757  PCK2; phosphoenolpyruvate carboxykinase 2, mitochondrial [KO:K01596] [EC:4.1.1.32]
102502588  PDHA1; pyruvate dehydrogenase (lipoamide) alpha 1 [KO:K00161] [EC:1.2.4.1]
102496416  PDHA2; pyruvate dehydrogenase (lipoamide) alpha 2 [KO:K00161] [EC:1.2.4.1]
102493674  PDHB; pyruvate dehydrogenase (lipoamide) beta [KO:K00162] [EC:1.2.4.1]
102483360  DLAT; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tup00010  Glycolysis / Gluconeogenesis
tup00053  Ascorbate and aldarate metabolism
tup00061  Fatty acid biosynthesis
tup00062  Fatty acid elongation
tup00071  Fatty acid degradation
tup00190  Oxidative phosphorylation
tup00220  Arginine biosynthesis
tup00250  Alanine, aspartate and glutamate metabolism
tup00280  Valine, leucine and isoleucine degradation
tup00350  Tyrosine metabolism
tup00470  D-Amino acid metabolism
tup00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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