KEGG   PATHWAY: tve03008
Entry
tve03008                    Pathway                                
Name
Ribosome biogenesis in eukaryotes - Trichophyton verrucosum
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
tve03008  Ribosome biogenesis in eukaryotes
tve03008

Organism
Trichophyton verrucosum [GN:tve]
Gene
TRV_01609  hypothetical protein [KO:K03115]
TRV_05447  hypothetical protein [KO:K03115]
TRV_01119  hypothetical protein [KO:K03097] [EC:2.7.11.1]
TRV_05516  pre-rRNA processing protein Utp22 [KO:K14544]
TRV_03112  ribosomal small subunit assembly protein, putative [KO:K14545]
TRV_05001  small nucleolar ribonucleoprotein complex component (Utp5), putative [KO:K14546]
TRV_01688  hypothetical protein [KO:K14548]
TRV_07341  hypothetical protein [KO:K14549]
TRV_07034  hypothetical protein [KO:K14550]
TRV_05177  WD repeat protein [KO:K14552]
TRV_01434  hypothetical protein [KO:K14553]
TRV_00522  hypothetical protein [KO:K14554]
TRV_02825  hypothetical protein [KO:K14555]
TRV_05654  hypothetical protein [KO:K14556]
TRV_03304  hypothetical protein [KO:K14557]
TRV_05955  hypothetical protein [KO:K14558]
TRV_05370  U3 small nucleolar ribonucleoprotein protein Mpp10 [KO:K14559]
TRV_02289  hypothetical protein [KO:K14560]
TRV_04034  hypothetical protein [KO:K14561]
TRV_06429  hypothetical protein [KO:K14563] [EC:2.1.1.-]
TRV_03248  hypothetical protein [KO:K14564]
TRV_05883  hypothetical protein [KO:K14565]
TRV_01714  hypothetical protein [KO:K12845]
TRV_07913  hypothetical protein [KO:K11131] [EC:5.4.99.-]
TRV_01327  hypothetical protein [KO:K11129]
TRV_06123  hypothetical protein [KO:K11128]
TRV_05283  small nucleolar ribonucleoprotein complex subunit Utp14, putative [KO:K14567]
TRV_01871  nucleolar RNAse III, putative [KO:K03685] [EC:3.1.26.3]
TRV_03942  hypothetical protein [KO:K14568] [EC:2.1.1.260]
TRV_06050  hypothetical protein [KO:K14569]
TRV_03526  hypothetical protein [KO:K14521] [EC:2.3.1.-]
TRV_06199  hypothetical protein [KO:K11108]
TRV_05828  hypothetical protein [KO:K01164] [EC:3.1.26.5]
TRV_05906  hypothetical protein [KO:K14522] [EC:3.1.26.5]
TRV_04930  hypothetical protein [KO:K03538] [EC:3.1.26.5]
TRV_06179  hypothetical protein [KO:K03537] [EC:3.1.26.5]
TRV_03281  hypothetical protein [KO:K14526] [EC:3.1.26.5]
TRV_01128  hypothetical protein [KO:K03539] [EC:3.1.26.5]
TRV_07796  hypothetical protein [KO:K14532]
TRV_02683  hypothetical protein [KO:K14530] [EC:3.1.26.5]
TRV_02187  hypothetical protein [KO:K14570] [EC:3.1.-.-]
TRV_01351  RNA exonuclease Rex3, putative [KO:K14570] [EC:3.1.-.-]
TRV_04521  hypothetical protein [KO:K13288] [EC:3.1.-.-]
TRV_05959  hypothetical protein [KO:K12618] [EC:3.1.13.-]
TRV_02267  hypothetical protein [KO:K12619] [EC:3.1.13.-]
TRV_07380  hypothetical protein [KO:K06943]
TRV_05325  hypothetical protein [KO:K14537]
TRV_05326  hypothetical protein [KO:K14537]
TRV_02963  hypothetical protein [KO:K14538]
TRV_04594  hypothetical protein [KO:K14571]
TRV_02139  hypothetical protein [KO:K14572]
TRV_00330  hypothetical protein [KO:K14572]
TRV_05442  hypothetical protein [KO:K14573]
TRV_00339  hypothetical protein [KO:K11883]
TRV_06104  hypothetical protein [KO:K14758] [EC:2.7.11.1]
TRV_07436  RAN small monomeric GTPase (Ran), putative [KO:K07936]
TRV_05648  hypothetical protein [KO:K14290]
TRV_02495  hypothetical protein [KO:K07562]
TRV_00896  hypothetical protein [KO:K14284]
TRV_00149  hypothetical protein [KO:K03264]
TRV_08056  hypothetical protein [KO:K14574]
TRV_02904  hypothetical protein [KO:K14536] [EC:3.6.5.-]
TRV_04880  hypothetical protein [KO:K14539] [EC:3.6.1.-]
TRV_01174  hypothetical protein [KO:K14575]
TRV_07925  hypothetical protein [KO:K18532] [EC:2.7.4.3]
TRV_03484  hypothetical protein [KO:K07178] [EC:2.7.11.1]
TRV_03191  hypothetical protein [KO:K07179] [EC:2.7.11.1]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
tve03010  Ribosome
KO pathway
ko03008   
LinkDB

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