KEGG   PATHWAY: tvi00020
Entry
tvi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Thiocystis violascens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
tvi00020  Citrate cycle (TCA cycle)
tvi00020

Module
tvi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:tvi00020]
tvi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:tvi00020]
tvi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:tvi00020]
Other DBs
GO: 0006099
Organism
Thiocystis violascens [GN:tvi]
Gene
Thivi_2850  citrate synthase I, hexameric type [KO:K01647] [EC:2.3.3.1]
Thivi_0521  citrate synthase I, hexameric type [KO:K01647] [EC:2.3.3.1]
Thivi_1892  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Thivi_4572  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Thivi_3855  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Thivi_3854  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Thivi_0001  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
Thivi_3404  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Thivi_3358  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Thivi_3357  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Thivi_2777  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Thivi_4349  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Thivi_2776  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Thivi_4347  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Thivi_2778  succinate dehydrogenase/fumarate reductase, cytochrome b subunit [KO:K00241]
Thivi_4351  succinate dehydrogenase subunit C [KO:K00241]
Thivi_4350  succinate dehydrogenase subunit D [KO:K00242]
Thivi_4525  tartrate dehydratase alpha subunit/fumarate hydratase class I, N-terminal domain protein [KO:K01676] [EC:4.2.1.2]
Thivi_0050  pyruvate carboxylase [KO:K01959] [EC:6.4.1.1]
Thivi_0052  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
Thivi_0237  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Thivi_3407  pyruvate dehydrogenase E1 component, homodimeric type [KO:K00163] [EC:1.2.4.1]
Thivi_3406  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form [KO:K00627] [EC:2.3.1.12]
Thivi_3813  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Thivi_3180  2-oxoacid:ferredoxin oxidoreductase, alpha subunit [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
tvi00010  Glycolysis / Gluconeogenesis
tvi00053  Ascorbate and aldarate metabolism
tvi00061  Fatty acid biosynthesis
tvi00071  Fatty acid degradation
tvi00190  Oxidative phosphorylation
tvi00220  Arginine biosynthesis
tvi00250  Alanine, aspartate and glutamate metabolism
tvi00280  Valine, leucine and isoleucine degradation
tvi00350  Tyrosine metabolism
tvi00470  D-Amino acid metabolism
tvi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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