KEGG   PATHWAY: uam00020
Entry
uam00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Uabimicrobium amorphum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
uam00020  Citrate cycle (TCA cycle)
uam00020

Module
uam_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:uam00020]
uam_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:uam00020]
uam_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:uam00020]
uam_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:uam00020]
Other DBs
GO: 0006099
Organism
Candidatus Uabimicrobium amorphum [GN:uam]
Gene
UABAM_03915  citrate synthase [KO:K01647] [EC:2.3.3.1]
UABAM_01973  3-isopropylmalate dehydratase large subunit [KO:K01681] [EC:4.2.1.3]
UABAM_00986  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
UABAM_05798  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
UABAM_01300  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
UABAM_05129  dihydrolipoyllysine-residue succinyltransferasecomponent of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
UABAM_02994  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
UABAM_05128  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UABAM_05818  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UABAM_03229  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
UABAM_00830  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
UABAM_00829  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
UABAM_00286  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
UABAM_00287  succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
UABAM_02131  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
UABAM_02130  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
UABAM_02132  hypothetical protein [KO:K00241]
UABAM_03566  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
UABAM_06452  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
UABAM_03250  phosphoenolpyruvate carboxykinase [ATP] 2 [KO:K01610] [EC:4.1.1.49]
UABAM_05821  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
UABAM_02511  pyruvate dehydrogenase (acetyl-transferring) E1component subunit alpha [KO:K00161] [EC:1.2.4.1]
UABAM_04207  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
UABAM_05820  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
UABAM_02512  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
UABAM_04206  pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
UABAM_05819  acetyltransferase component of pyruvatedehydrogenase complex [KO:K00627] [EC:2.3.1.12]
UABAM_02513  dihydrolipoyllysine-residue acetyltransferasecomponent of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
UABAM_04205  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
uam00010  Glycolysis / Gluconeogenesis
uam00053  Ascorbate and aldarate metabolism
uam00061  Fatty acid biosynthesis
uam00071  Fatty acid degradation
uam00190  Oxidative phosphorylation
uam00220  Arginine biosynthesis
uam00250  Alanine, aspartate and glutamate metabolism
uam00280  Valine, leucine and isoleucine degradation
uam00350  Tyrosine metabolism
uam00470  D-Amino acid metabolism
uam00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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