KEGG   PATHWAY: udv00020
Entry
udv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Uloborus diversus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
udv00020  Citrate cycle (TCA cycle)
udv00020

Module
udv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:udv00020]
udv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:udv00020]
udv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:udv00020]
Other DBs
GO: 0006099
Organism
Uloborus diversus [GN:udv]
Gene
129221341  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
129222246  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
129222834  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
129232262  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
129233123  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
129231733  probable aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
129231748  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
129231756  LOW QUALITY PROTEIN: aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
129235308  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
129221269  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
129232347  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
129233885  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
129229300  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
129229369  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
129220664  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
129221266  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
129221530  2-oxoglutarate dehydrogenase complex component E1-like [KO:K00164] [EC:1.2.4.2]
129220017  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
129222681  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
129219310  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
129219730  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
129220372  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
129220374  LOW QUALITY PROTEIN: succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
129234434  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
129233512  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
129222041  LOW QUALITY PROTEIN: uncharacterized protein LOC129222041 [KO:K00235] [EC:1.3.5.1]
129233858  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
129229829  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
129232677  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
129224176  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
129222790  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
129224602  LOW QUALITY PROTEIN: pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
129224605  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
129216091  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
129233258  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
129232800  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
udv00010  Glycolysis / Gluconeogenesis
udv00053  Ascorbate and aldarate metabolism
udv00061  Fatty acid biosynthesis
udv00062  Fatty acid elongation
udv00071  Fatty acid degradation
udv00190  Oxidative phosphorylation
udv00220  Arginine biosynthesis
udv00250  Alanine, aspartate and glutamate metabolism
udv00280  Valine, leucine and isoleucine degradation
udv00350  Tyrosine metabolism
udv00470  D-Amino acid metabolism
udv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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