KEGG   PATHWAY: var00020
Entry
var00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vigna angularis (adzuki bean)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
var00020  Citrate cycle (TCA cycle)
var00020

Module
var_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:var00020]
var_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:var00020]
var_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:var00020]
var_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:var00020]
var_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:var00020]
Other DBs
GO: 0006099
Organism
Vigna angularis (adzuki bean) [GN:var]
Gene
108338004  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
108343557  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
108334387  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
108333008  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
108343037  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
108322423  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
108336020  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
108326919  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
108342075  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
108321291  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
108340580  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
108333994  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
108346008  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
108338625  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
108334414  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
108335968  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
108335969  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
108322751  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
108326454  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
108333239  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
108338056  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
108326410  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
108338094  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
108323818  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
108322220  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
108343408  leghemoglobin reductase [KO:K00382] [EC:1.8.1.4]
108343805  probable succinyl-CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108326572  succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108335773  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
108330962  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
108334450  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
108339542  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
108338862  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
108332060  succinate dehydrogenase subunit 4, mitochondrial [KO:K25801]
108326512  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
108326513  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
108325993  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
108347049  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
108321774  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
108320585  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
108340493  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108338200  phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
108328125  phosphoenolpyruvate carboxykinase [ATP]-like [KO:K01610] [EC:4.1.1.49]
108347625  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
108322250  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
108322350  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
108321458  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
108321718  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
108343266  pyruvate dehydrogenase E1 component subunit beta-like [KO:K00162] [EC:1.2.4.1]
108326623  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
108347798  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
108346202  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
108326457  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
108326521  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
var00010  Glycolysis / Gluconeogenesis
var00053  Ascorbate and aldarate metabolism
var00061  Fatty acid biosynthesis
var00062  Fatty acid elongation
var00071  Fatty acid degradation
var00190  Oxidative phosphorylation
var00220  Arginine biosynthesis
var00250  Alanine, aspartate and glutamate metabolism
var00280  Valine, leucine and isoleucine degradation
var00350  Tyrosine metabolism
var00470  D-Amino acid metabolism
var00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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