KEGG   PATHWAY: vcan00020
Entry
vcan00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Venturia canescens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vcan00020  Citrate cycle (TCA cycle)
vcan00020

Module
vcan_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vcan00020]
vcan_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vcan00020]
vcan_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vcan00020]
vcan_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vcan00020]
vcan_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vcan00020]
Other DBs
GO: 0006099
Organism
Venturia canescens [GN:vcan]
Gene
122418936  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
122406304  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
122414078  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
122414368  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
122406273  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
122409991  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
122417058  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
122412134  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
122406425  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
122416179  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
122406727  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
122408648  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
122413503  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
122408756  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122416627  uncharacterized protein LOC122416627 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122413541  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122411224  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
122411226  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
122415038  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122409064  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122413801  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
122412838  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
122415603  probable fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
122407424  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
122413749  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122415932  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
122407968  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122415740  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
122416711  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
122416918  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
122415425  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
122406676  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [KO:K00627] [EC:2.3.1.12]
122407622  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vcan00010  Glycolysis / Gluconeogenesis
vcan00053  Ascorbate and aldarate metabolism
vcan00061  Fatty acid biosynthesis
vcan00062  Fatty acid elongation
vcan00071  Fatty acid degradation
vcan00190  Oxidative phosphorylation
vcan00220  Arginine biosynthesis
vcan00250  Alanine, aspartate and glutamate metabolism
vcan00280  Valine, leucine and isoleucine degradation
vcan00350  Tyrosine metabolism
vcan00470  D-Amino acid metabolism
vcan00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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