KEGG   PATHWAY: vcn00020
Entry
vcn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Volvox carteri f. nagariensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vcn00020  Citrate cycle (TCA cycle)
vcn00020

Module
vcn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vcn00020]
vcn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vcn00020]
vcn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vcn00020]
Other DBs
GO: 0006099
Organism
Volvox carteri f. nagariensis [GN:vcn]
Gene
VOLCADRAFT_79933  hypothetical protein [KO:K01647] [EC:2.3.3.1]
VOLCADRAFT_79930  hypothetical protein [KO:K01647] [EC:2.3.3.1]
VOLCADRAFT_82870  hypothetical protein [KO:K01647] [EC:2.3.3.1]
VOLCADRAFT_97107  hypothetical protein [KO:K01648] [EC:2.3.3.8]
VOLCADRAFT_79099  hypothetical protein [KO:K01648] [EC:2.3.3.8]
VOLCADRAFT_76010  ach1; mitochondrial aconitate hydratase [KO:K01681] [EC:4.2.1.3]
VOLCADRAFT_77629  idh3; isocitrate dehydrogenase, NADP-dependent, mitochondrial [KO:K00031] [EC:1.1.1.42]
VOLCADRAFT_104752  idh2; isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
VOLCADRAFT_119675  idh1; isocitrate dehydrogenase, NAD-dependent, mitochondrial [KO:K00030] [EC:1.1.1.41]
VOLCADRAFT_74810  ogd1; E1 subunit of 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
VOLCADRAFT_81632  ogd2; 2-oxoglutarate dehydrogenase, E2 component [KO:K00658] [EC:2.3.1.61]
VOLCADRAFT_83716  dld2; dihydrolipoamide dehydrogenase plastid precursor [KO:K00382] [EC:1.8.1.4]
VOLCADRAFT_95813  dld1; dihydrolipoamide dehydrogenase mitochondrial precursor [KO:K00382] [EC:1.8.1.4]
VOLCADRAFT_107577  scla1; succinate-coa ligase alpha chain, succinyl-CoA synthetase mitochondrial precursor [KO:K01899] [EC:6.2.1.4 6.2.1.5]
VOLCADRAFT_104417  sclb1; succinate-coa ligase beta chain, succinyl-CoA synthetase mitochondrial precursor [KO:K01900] [EC:6.2.1.4 6.2.1.5]
VOLCADRAFT_74298  sdh1; succinate dehydrogenase subunit A, mitochondrial [KO:K00234] [EC:1.3.5.1]
VOLCADRAFT_78776  sdh2; iron-sulfur subunit of mitochondrial succinate dehydrogenase [KO:K00235] [EC:1.3.5.1]
VOLCADRAFT_77105  fum1; fumarate hydratase [KO:K01676] [EC:4.2.1.2]
VOLCADRAFT_62042  fum2; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
VOLCADRAFT_109769  hypothetical protein [KO:K00025] [EC:1.1.1.37]
VOLCADRAFT_77493  mdh1; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
VOLCADRAFT_82979  mdh2; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
VOLCADRAFT_75816  mdh3; malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
VOLCADRAFT_102707  pyc1; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
VOLCADRAFT_106350  pck4; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
VOLCADRAFT_71551  pck2; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
VOLCADRAFT_61316  pck1; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
VOLCADRAFT_81482  pck3; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
VOLCADRAFT_68179  hypothetical protein [KO:K00161] [EC:1.2.4.1]
VOLCADRAFT_104783  hypothetical protein [KO:K00161] [EC:1.2.4.1]
VOLCADRAFT_83989  hypothetical protein [KO:K00162] [EC:1.2.4.1]
VOLCADRAFT_77470  hypothetical protein [KO:K00162] [EC:1.2.4.1]
VOLCADRAFT_108817  hypothetical protein [KO:K00162] [EC:1.2.4.1]
VOLCADRAFT_80947  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
VOLCADRAFT_79498  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vcn00010  Glycolysis / Gluconeogenesis
vcn00053  Ascorbate and aldarate metabolism
vcn00061  Fatty acid biosynthesis
vcn00062  Fatty acid elongation
vcn00071  Fatty acid degradation
vcn00190  Oxidative phosphorylation
vcn00220  Arginine biosynthesis
vcn00250  Alanine, aspartate and glutamate metabolism
vcn00280  Valine, leucine and isoleucine degradation
vcn00350  Tyrosine metabolism
vcn00470  D-Amino acid metabolism
vcn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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