KEGG   PATHWAY: vcrb00020
Entry
vcrb00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Vespa crabro (European hornet)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vcrb00020  Citrate cycle (TCA cycle)
vcrb00020

Module
vcrb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vcrb00020]
vcrb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vcrb00020]
vcrb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vcrb00020]
vcrb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vcrb00020]
vcrb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vcrb00020]
Other DBs
GO: 0006099
Organism
Vespa crabro (European hornet) [GN:vcrb]
Gene
124422977  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
124424463  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
124433108  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
124425175  probable aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
124431693  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
124427065  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
124427738  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
124430175  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
124431349  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
124423557  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
124424990  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
124428966  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
124428512  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
124428132  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
124425920  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124432016  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124429820  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
124429831  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
124422491  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like isoform X1 [KO:K00235] [EC:1.3.5.1]
124425234  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
124423536  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
124424473  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
124428817  probable fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
124422091  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
124422200  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124423204  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
124423644  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124425093  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
124426449  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
124421532  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
124427525  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
124424865  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
124431522  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
124421579  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
124430816  pyruvate dehydrogenase protein X component-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vcrb00010  Glycolysis / Gluconeogenesis
vcrb00053  Ascorbate and aldarate metabolism
vcrb00061  Fatty acid biosynthesis
vcrb00062  Fatty acid elongation
vcrb00071  Fatty acid degradation
vcrb00190  Oxidative phosphorylation
vcrb00220  Arginine biosynthesis
vcrb00250  Alanine, aspartate and glutamate metabolism
vcrb00280  Valine, leucine and isoleucine degradation
vcrb00350  Tyrosine metabolism
vcrb00470  D-Amino acid metabolism
vcrb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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