KEGG   PATHWAY: ver00020
Entry
ver00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Verrucosispora sp. NA02020
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ver00020  Citrate cycle (TCA cycle)
ver00020

Module
ver_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ver00020]
ver_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ver00020]
ver_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ver00020]
ver_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ver00020]
ver_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ver00020]
Other DBs
GO: 0006099
Organism
Verrucosispora sp. NA02020 [GN:ver]
Gene
HUT12_03060  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
HUT12_20105  citrate synthase [KO:K01647] [EC:2.3.3.1]
HUT12_22440  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HUT12_27740  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HUT12_27150  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
HUT12_24875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HUT12_03585  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HUT12_03580  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HUT12_27820  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HUT12_27825  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HUT12_10195  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HUT12_27615  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HUT12_10190  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HUT12_27620  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HUT12_10200  succinate dehydrogenase cytochrome b subunit [KO:K00241]
HUT12_30095  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HUT12_30085  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HUT12_27755  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HUT12_04460  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
HUT12_07395  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
HUT12_15010  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
HUT12_25390  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HUT12_24880  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ver00010  Glycolysis / Gluconeogenesis
ver00053  Ascorbate and aldarate metabolism
ver00061  Fatty acid biosynthesis
ver00071  Fatty acid degradation
ver00190  Oxidative phosphorylation
ver00220  Arginine biosynthesis
ver00250  Alanine, aspartate and glutamate metabolism
ver00280  Valine, leucine and isoleucine degradation
ver00350  Tyrosine metabolism
ver00470  D-Amino acid metabolism
ver00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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