KEGG   PATHWAY: vgo00630
Entry
vgo00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Variibacter gotjawalensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
vgo00630  Glyoxylate and dicarboxylate metabolism
vgo00630

Module
vgo_M00012  Glyoxylate cycle [PATH:vgo00630]
vgo_M00621  Glycine cleavage system [PATH:vgo00630]
vgo_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:vgo00630]
Other DBs
GO: 0046487 0043648
Organism
Variibacter gotjawalensis [GN:vgo]
Gene
GJW-30_1_01322  icl; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
GJW-30_1_01982  acsA_3; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
GJW-30_1_01057  acs; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
GJW-30_1_00158  acsA_1; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
GJW-30_1_00492  acsA_2; acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
GJW-30_1_00972  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
GJW-30_1_01225  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GJW-30_1_02822  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
GJW-30_1_01195  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
GJW-30_1_00613  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
GJW-30_1_02463  fadA_1; putative acyltransferase [KO:K00626] [EC:2.3.1.9]
GJW-30_1_02904  fadA_2; 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
GJW-30_1_03244  pcaF_2; beta-ketoadipyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
GJW-30_1_00150  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
GJW-30_1_00836  phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
GJW-30_1_03945  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
GJW-30_1_00835  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
GJW-30_1_01981  phaJ; (R)-specific enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
GJW-30_1_02778  glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein [KO:K05606] [EC:5.1.99.1]
GJW-30_1_03088  accA1_2; acetyl-/propionyl-coenzyme A carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
GJW-30_1_03557  accD5; putative propionyl-CoA carboxylase beta chain 5 [KO:K01966] [EC:6.4.1.3 2.1.3.15]
GJW-30_1_03838  mutA; methylmalonyl-CoA mutase small subunit [KO:K01847] [EC:5.4.99.2]
GJW-30_1_03839  mutB; methylmalonyl-CoA mutase large subunit [KO:K01847] [EC:5.4.99.2]
GJW-30_1_00968  putative FAD-linked oxidoreductase [KO:K00104] [EC:1.1.99.14]
GJW-30_1_00969  putative FAD-linked oxidoreductase [KO:K11472] [EC:1.1.99.14]
GJW-30_1_00970  lutA; lactate utilization protein A [KO:K11473] [EC:1.1.99.14]
GJW-30_1_02073  katE; catalase C [KO:K03781] [EC:1.11.1.6]
GJW-30_1_00436  srpA; catalase-related peroxidase precursor [KO:K03781] [EC:1.11.1.6]
GJW-30_1_02399  glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
GJW-30_1_00703  ghrA; glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
GJW-30_1_03709  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
GJW-30_1_02347  soluble hydrogenase 42 kDa subunit [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
GJW-30_1_01042  soluble hydrogenase 42 kDa subunit [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
GJW-30_1_03057  glnA; glutamine synthetase 1 [KO:K01915] [EC:6.3.1.2]
GJW-30_1_03850  puuA; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
GJW-30_1_03121  glyA1; serine hydroxymethyltransferase 1 [KO:K00600] [EC:2.1.2.1]
GJW-30_1_01285  gcvPA; putative glycine dehydrogenase (decarboxylating) subunit 1 [KO:K00282] [EC:1.4.4.2]
GJW-30_1_01284  gcvPB; putative glycine dehydrogenase (decarboxylating) subunit 2 [KO:K00283] [EC:1.4.4.2]
GJW-30_1_01287  gcvT; aminomethyltransferase [KO:K00605] [EC:2.1.2.10]
GJW-30_1_01217  lpd3; dihydrolipoyl dehydrogenase 3 [KO:K00382] [EC:1.8.1.4]
GJW-30_1_02985  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GJW-30_1_01286  gcvH; glycine cleavage system H protein [KO:K02437]
GJW-30_1_00142  ttdB; L(+)-tartrate dehydratase subunit beta [KO:K03780] [EC:4.2.1.32]
GJW-30_1_00811  dmlA; D-malate dehydrogenase [decarboxylating] [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
GJW-30_1_00485  ttuC; putative tartrate dehydrogenase/decarboxylase TtuC [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
GJW-30_1_00272  eda; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
GJW-30_1_02939  fdhF_2; formate dehydrogenase H [KO:K00123] [EC:1.17.1.9]
GJW-30_1_02943  putative formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
GJW-30_1_02944  nuoF; NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
GJW-30_1_02940  fdhB1; formate dehydrogenase iron-sulfur subunit [KO:K00124]
GJW-30_1_02941  fdoI; formate dehydrogenase, cytochrome b556(fdo) subunit [KO:K00127]
GJW-30_1_03998  alpha/beta hydrolase fold protein [KO:K01432] [EC:3.5.1.9]
GJW-30_1_02115  fmdA_2; formamidase [KO:K01455] [EC:3.5.1.49]
GJW-30_1_00304  oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]
GJW-30_1_00303  frc_1; formyl-coenzyme A transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
vgo00010  Glycolysis / Gluconeogenesis
vgo00020  Citrate cycle (TCA cycle)
vgo00030  Pentose phosphate pathway
vgo00053  Ascorbate and aldarate metabolism
vgo00071  Fatty acid degradation
vgo00230  Purine metabolism
vgo00250  Alanine, aspartate and glutamate metabolism
vgo00260  Glycine, serine and threonine metabolism
vgo00620  Pyruvate metabolism
vgo00710  Carbon fixation by Calvin cycle
vgo00750  Vitamin B6 metabolism
vgo00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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