KEGG   PATHWAY: vpn00010
Entry
vpn00010                    Pathway                                
Name
Glycolysis / Gluconeogenesis - Virgibacillus dokdonensis
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vpn00010  Glycolysis / Gluconeogenesis
vpn00010

Module
vpn_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:vpn00010]
vpn_M00002  Glycolysis, core module involving three-carbon compounds [PATH:vpn00010]
vpn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vpn00010]
vpn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vpn00010]
Other DBs
GO: 0006096 0006094
Organism
Virgibacillus dokdonensis [GN:vpn]
Gene
A21D_00280  glcK_1; Glucokinase [KO:K25026] [EC:2.7.1.2]
A21D_03236  glcK_2; Glucokinase [KO:K25026] [EC:2.7.1.2]
A21D_02855  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
A21D_02965  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
A21D_00957  glpX; Fructose-1,6-bisphosphatase class 2 [KO:K02446] [EC:3.1.3.11]
A21D_01610  fda; Fructose-bisphosphate aldolase class 1 [KO:K01623] [EC:4.1.2.13]
A21D_00960  fbaA_1; putative fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
A21D_01925  fbaA_2; putative fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
A21D_01607  gatY_2; D-tagatose-1,6-bisphosphate aldolase subunit GatY [KO:K01624] [EC:4.1.2.13]
A21D_00106  tpiA; Triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
A21D_01927  triosephosphate isomerase [KO:K01803] [EC:5.3.1.1]
A21D_00108  gapA; Glyceraldehyde-3-phosphate dehydrogenase 1 [KO:K00134] [EC:1.2.1.12]
A21D_02978  gapB; Glyceraldehyde-3-phosphate dehydrogenase 2 [KO:K00150] [EC:1.2.1.59]
A21D_00107  pgk; Phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
A21D_01042  hypothetical protein [KO:K01834] [EC:5.4.2.11]
A21D_01043  pspA; Phosphoserine phosphatase 1 [KO:K01834] [EC:5.4.2.11]
A21D_00105  gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [KO:K15633] [EC:5.4.2.12]
A21D_00104  eno; Enolase [KO:K01689] [EC:4.2.1.11]
A21D_02966  pyk; Pyruvate kinase [KO:K00873] [EC:2.7.1.40]
A21D_01213  pdhA_1; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A21D_03794  pdhA_2; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A21D_01212  pdhB_1; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
A21D_03793  pdhB_2; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
A21D_03971  pdhC_4; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
A21D_01211  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
A21D_03792  pdhC_3; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
A21D_03791  pdhD_3; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A21D_01210  pdhD_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A21D_03290  pdhD_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A21D_00979  ldhP; L-lactate dehydrogenase P [KO:K00016] [EC:1.1.1.27]
A21D_02804  ldhB; L-lactate dehydrogenase 2 [KO:K00016] [EC:1.1.1.27]
A21D_02890  adhE_2; Aldehyde-alcohol dehydrogenase [KO:K04072] [EC:1.2.1.10 1.1.1.1]
A21D_03031  adhA; Alcohol dehydrogenase 1 [KO:K13953] [EC:1.1.1.1]
A21D_01911  mdh_1; NAD-dependent methanol dehydrogenase [KO:K13954] [EC:1.1.1.1]
A21D_02305  Putative aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
A21D_03302  alkH; Aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
A21D_01573  aldA; Putative aldehyde dehydrogenase AldA [KO:K00128] [EC:1.2.1.3]
A21D_00382  betB; NAD/NADP-dependent betaine aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
A21D_00195  acoD; Acetaldehyde dehydrogenase 2 [KO:K00138] [EC:1.2.1.-]
A21D_01418  acsA_2; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
A21D_02366  acsA_3; Acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
A21D_00851  mro; Aldose 1-epimerase precursor [KO:K01785] [EC:5.1.3.3]
A21D_01864  pgcA; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
A21D_02884  pckA; Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
A21D_00900  licH_3; putative 6-phospho-beta-glucosidase [KO:K01222] [EC:3.2.1.86]
A21D_00222  licH_1; putative 6-phospho-beta-glucosidase [KO:K01222] [EC:3.2.1.86]
A21D_00423  licH_2; putative 6-phospho-beta-glucosidase [KO:K01222] [EC:3.2.1.86]
A21D_02527  licH_4; putative 6-phospho-beta-glucosidase [KO:K01222] [EC:3.2.1.86]
A21D_01912  gmuD_1; 6-phospho-beta-glucosidase GmuD [KO:K01223] [EC:3.2.1.86]
A21D_02186  bglH; Aryl-phospho-beta-D-glucosidase BglH [KO:K01223] [EC:3.2.1.86]
A21D_02532  gmuD_2; 6-phospho-beta-glucosidase GmuD [KO:K01223] [EC:3.2.1.86]
A21D_01718  crr; Glucose-specific phosphotransferase enzyme IIA component [KO:K02777] [EC:2.7.1.-]
A21D_00894  ptsG_1; PTS system glucose-specific EIICBA component [KO:K02791] [EC:2.7.1.199 2.7.1.208]
A21D_01816  malP_2; PTS system maltose-specific EIICB component [KO:K02791] [EC:2.7.1.199 2.7.1.208]
A21D_02526  ptsG_2; PTS system glucose-specific EIICBA component [KO:K20118] [EC:2.7.1.199]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vpn00020  Citrate cycle (TCA cycle)
vpn00030  Pentose phosphate pathway
vpn00500  Starch and sucrose metabolism
vpn00620  Pyruvate metabolism
vpn00640  Propanoate metabolism
vpn00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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