KEGG   PATHWAY: vps00020
Entry
vps00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vespula pensylvanica (western yellowjacket)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vps00020  Citrate cycle (TCA cycle)
vps00020

Module
vps_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vps00020]
vps_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vps00020]
vps_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vps00020]
vps_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vps00020]
vps_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vps00020]
Other DBs
GO: 0006099
Organism
Vespula pensylvanica (western yellowjacket) [GN:vps]
Gene
122627821  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
122630380  probable citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
122637096  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
122628742  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
122636073  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
122631945  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
122634650  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
122635200  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
122632578  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
122629426  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
122633836  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
122635787  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
122632908  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122637417  LOW QUALITY PROTEIN: uncharacterized protein LOC122637417 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122630891  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122636821  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
122636825  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
122628193  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
122628786  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
122629341  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
122630438  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
122638006  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
122634213  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
122634883  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
122627475  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
122628670  malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
122629726  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122633325  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122632008  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
122626873  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
122628500  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
122635158  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
122632222  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
122634150  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
122635884  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vps00010  Glycolysis / Gluconeogenesis
vps00053  Ascorbate and aldarate metabolism
vps00061  Fatty acid biosynthesis
vps00062  Fatty acid elongation
vps00071  Fatty acid degradation
vps00190  Oxidative phosphorylation
vps00220  Arginine biosynthesis
vps00250  Alanine, aspartate and glutamate metabolism
vps00280  Valine, leucine and isoleucine degradation
vps00350  Tyrosine metabolism
vps00470  D-Amino acid metabolism
vps00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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