KEGG   PATHWAY: vun00020
Entry
vun00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vigna unguiculata (cowpea)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vun00020  Citrate cycle (TCA cycle)
vun00020

Module
vun_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vun00020]
vun_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vun00020]
vun_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vun00020]
vun_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vun00020]
vun_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vun00020]
Other DBs
GO: 0006099
Organism
Vigna unguiculata (cowpea) [GN:vun]
Gene
114195544  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
114188205  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
114192780  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
114188120  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
114193523  ATP-citrate synthase alpha chain protein 2 isoform X1 [KO:K01648] [EC:2.3.3.8]
114187468  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
114164049  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
114175654  ATP-citrate synthase beta chain protein 1-like isoform X1 [KO:K01648] [EC:2.3.3.8]
114174118  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
114169481  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
114172994  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
114183593  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
114195221  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
114194454  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
114181929  isocitrate dehydrogenase [NADP]-like isoform X1 [KO:K00031] [EC:1.1.1.42]
114192048  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
114194462  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
114173960  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
114176236  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
114191772  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
114185835  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
114194355  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
114195929  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
114175599  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
114177839  leghemoglobin reductase [KO:K00382] [EC:1.8.1.4]
114182752  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
114192001  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
114176517  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
114173323  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
114170728  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
114164367  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
114169953  uncharacterized protein LOC114169953 [KO:K00236]
114168209  uncharacterized protein LOC114168209 [KO:K00236]
114164070  succinate dehydrogenase subunit 4, mitochondrial [KO:K25801]
114192469  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
114192758  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
114189998  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
114166484  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
114169610  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
114175986  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
114178814  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
114174245  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
114177011  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
114173848  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
114164321  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
114166848  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
114178926  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
114185513  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
114187346  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
114194883  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
114192308  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
114192400  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
114191691  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
114165967  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
114174524  LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vun00010  Glycolysis / Gluconeogenesis
vun00053  Ascorbate and aldarate metabolism
vun00061  Fatty acid biosynthesis
vun00062  Fatty acid elongation
vun00071  Fatty acid degradation
vun00190  Oxidative phosphorylation
vun00220  Arginine biosynthesis
vun00250  Alanine, aspartate and glutamate metabolism
vun00280  Valine, leucine and isoleucine degradation
vun00350  Tyrosine metabolism
vun00470  D-Amino acid metabolism
vun00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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