KEGG   PATHWAY: vve00020
Entry
vve00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Vespa velutina (Asian hornet)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
vve00020  Citrate cycle (TCA cycle)
vve00020

Module
vve_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:vve00020]
vve_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:vve00020]
vve_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:vve00020]
vve_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:vve00020]
vve_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:vve00020]
Other DBs
GO: 0006099
Organism
Vespa velutina (Asian hornet) [GN:vve]
Gene
124948182  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
124950630  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
124955025  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
124948713  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
124955485  cytoplasmic aconitate hydratase-like isoform X1 [KO:K01681] [EC:4.2.1.3]
124952147  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
124951133  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
124954945  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
124955198  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
124948542  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
124949891  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
124953313  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
124956242  dihydrolipoyl dehydrogenase, mitochondrial isoform X1 [KO:K00382] [EC:1.8.1.4]
124952862  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
124951483  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124946794  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124956093  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
124956102  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
124947496  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like isoform X1 [KO:K00235] [EC:1.3.5.1]
124948804  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
124950097  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
124950331  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
124957742  probable fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
124947327  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
124954505  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
124947517  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
124948136  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124948829  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
124949812  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124951960  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
124948602  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
124951321  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
124948650  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
124955279  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
124954403  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
124948530  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
vve00010  Glycolysis / Gluconeogenesis
vve00053  Ascorbate and aldarate metabolism
vve00061  Fatty acid biosynthesis
vve00062  Fatty acid elongation
vve00071  Fatty acid degradation
vve00190  Oxidative phosphorylation
vve00220  Arginine biosynthesis
vve00250  Alanine, aspartate and glutamate metabolism
vve00280  Valine, leucine and isoleucine degradation
vve00350  Tyrosine metabolism
vve00470  D-Amino acid metabolism
vve00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system