KEGG   PATHWAY: vvy03030
Entry
vvy03030                    Pathway                                
Name
DNA replication - Vibrio vulnificus YJ016
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
vvy03030  DNA replication
vvy03030

Organism
Vibrio vulnificus YJ016 [GN:vvy]
Gene
VV3132  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
VVA1495  DNA polymerase III, alpha subunit [KO:K02342] [EC:2.7.7.7]
VV2101  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
VV2529  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
VVA1405  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
VV2541  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
VV2411  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
VV1281  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
VV0909  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
VV2687  DNA polymerase III, psi subunit [KO:K02344] [EC:2.7.7.7]
VV2908  DNA polymerase III, chi subunit [KO:K02339] [EC:2.7.7.7]
VV0012  DNA polymerase III, beta chain [KO:K02338] [EC:2.7.7.7]
VV2979  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
VV0562  DNA primase [KO:K02316] [EC:2.7.7.101]
VV2953  single-stranded DNA-binding protein [KO:K03111]
VV0516  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
VV0806  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
VV2254  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
VV2530  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
VV2543  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
VV0186  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
VV0982  NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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