KEGG   PATHWAY: vzi03430
Entry
vzi03430                    Pathway                                
Name
Mismatch repair - Vibrio ziniensis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
vzi03430  Mismatch repair
vzi03430

Other DBs
GO: 0006298
Organism
Vibrio ziniensis [GN:vzi]
Gene
G5S32_12240  mutS; DNA mismatch repair protein MutS [KO:K03555]
G5S32_13345  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
G5S32_11595  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
G5S32_00420  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
G5S32_06025  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
G5S32_03390  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
G5S32_03715  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
G5S32_02405  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
G5S32_05140  ssb; single-stranded DNA-binding protein [KO:K03111]
G5S32_13015  ssb; single-stranded DNA-binding protein [KO:K03111]
G5S32_16365  single-stranded DNA-binding protein [KO:K03111]
G5S32_11180  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
G5S32_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
G5S32_10085  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
G5S32_03915  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
G5S32_09835  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
G5S32_08120  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
G5S32_11125  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
G5S32_13730  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
G5S32_18355  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
G5S32_19275  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
G5S32_01805  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
G5S32_11655  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
G5S32_03995  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
G5S32_01215  Dam family site-specific DNA-(adenine-N6)-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

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