KEGG   PATHWAY: wee00020
Entry
wee00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Wolbachia endosymbiont of Corcyra cephalonica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
wee00020  Citrate cycle (TCA cycle)
wee00020

Module
wee_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:wee00020]
wee_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:wee00020]
wee_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:wee00020]
wee_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:wee00020]
Other DBs
GO: 0006099
Organism
Wolbachia endosymbiont of Corcyra cephalonica [GN:wee]
Gene
LOK48_03240  citrate synthase [KO:K01647] [EC:2.3.3.1]
LOK48_05505  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LOK48_04755  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LOK48_02690  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LOK48_00330  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LOK48_00190  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LOK48_04955  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LOK48_03125  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LOK48_03130  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LOK48_02840  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LOK48_04590  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LOK48_05395  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LOK48_05400  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LOK48_01015  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LOK48_05150  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LOK48_00210  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LOK48_01195  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LOK48_03710  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
wee00010  Glycolysis / Gluconeogenesis
wee00061  Fatty acid biosynthesis
wee00190  Oxidative phosphorylation
wee00220  Arginine biosynthesis
wee00250  Alanine, aspartate and glutamate metabolism
wee00280  Valine, leucine and isoleucine degradation
wee00470  D-Amino acid metabolism
wee00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system