KEGG   PATHWAY: wer00020
Entry
wer00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Wolbachia endosymbiont of Drosophila santomea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
wer00020  Citrate cycle (TCA cycle)
wer00020

Module
wer_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:wer00020]
wer_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:wer00020]
wer_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:wer00020]
wer_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:wer00020]
Other DBs
GO: 0006099
Organism
Wolbachia endosymbiont of Drosophila santomea [GN:wer]
Gene
wSan_08320  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
wSan_00880  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
wSan_05280  Isocitrate dehydrogenase, NAD-dependent [KO:K00031] [EC:1.1.1.42]
wSan_12280  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
wSan_11100  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
wSan_02430  lpdA1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
wSan_04920  lpdA2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
wSan_08810  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
wSan_08820  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
wSan_03360  sdhA; Succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
wSan_04710  sdhB; Succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
wSan_11550  sdhC; Succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
wSan_11560  sdhD; Succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
wSan_03820  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
wSan_08080  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
wSan_03190  pdhA; Pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
wSan_03660  Pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit, putative [KO:K00162] [EC:1.2.4.1]
wSan_08730  aceF; Pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
wer00010  Glycolysis / Gluconeogenesis
wer00061  Fatty acid biosynthesis
wer00190  Oxidative phosphorylation
wer00220  Arginine biosynthesis
wer00250  Alanine, aspartate and glutamate metabolism
wer00280  Valine, leucine and isoleucine degradation
wer00470  D-Amino acid metabolism
wer00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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