KEGG   PATHWAY: wes00020
Entry
wes00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Wolbachia endosymbiont of Spodoptera picta
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
wes00020  Citrate cycle (TCA cycle)
wes00020

Module
wes_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:wes00020]
wes_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:wes00020]
wes_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:wes00020]
wes_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:wes00020]
Other DBs
GO: 0006099
Organism
Wolbachia endosymbiont of Spodoptera picta [GN:wes]
Gene
JKF54_03655  citrate synthase [KO:K01647] [EC:2.3.3.1]
JKF54_04755  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JKF54_02170  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JKF54_01900  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JKF54_01555  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JKF54_00735  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JKF54_04200  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JKF54_03880  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JKF54_03875  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JKF54_02070  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JKF54_02340  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JKF54_04650  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
JKF54_04655  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
JKF54_05780  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JKF54_04390  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JKF54_00750  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JKF54_05605  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
JKF54_03200  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
wes00010  Glycolysis / Gluconeogenesis
wes00061  Fatty acid biosynthesis
wes00190  Oxidative phosphorylation
wes00220  Arginine biosynthesis
wes00250  Alanine, aspartate and glutamate metabolism
wes00280  Valine, leucine and isoleucine degradation
wes00470  D-Amino acid metabolism
wes00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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