KEGG   PATHWAY: wex00020
Entry
wex00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Wolbachia endosymbiont of Ostrinia furnacalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
wex00020  Citrate cycle (TCA cycle)
wex00020

Module
wex_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:wex00020]
wex_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:wex00020]
wex_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:wex00020]
wex_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:wex00020]
Other DBs
GO: 0006099
Organism
Wolbachia endosymbiont of Ostrinia furnacalis [GN:wex]
Gene
M1L25_000830  citrate synthase [KO:K01647] [EC:2.3.3.1]
M1L25_000266  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
M1L25_000999  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M1L25_001034  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
M1L25_000525  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
M1L25_000229  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M1L25_000508  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M1L25_000955  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M1L25_000956  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M1L25_000978  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M1L25_000789  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M1L25_000245  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
M1L25_000246  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
M1L25_000564  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M1L25_000115  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M1L25_000505  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
M1L25_000699  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
M1L25_001111  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
wex00010  Glycolysis / Gluconeogenesis
wex00061  Fatty acid biosynthesis
wex00190  Oxidative phosphorylation
wex00220  Arginine biosynthesis
wex00250  Alanine, aspartate and glutamate metabolism
wex00280  Valine, leucine and isoleucine degradation
wex00470  D-Amino acid metabolism
wex00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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