KEGG   PATHWAY: wpi00020
Entry
wpi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Wolbachia endosymbiont of Culex quinquefasciatus Pel
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
wpi00020  Citrate cycle (TCA cycle)
wpi00020

Module
wpi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:wpi00020]
wpi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:wpi00020]
wpi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:wpi00020]
wpi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:wpi00020]
Other DBs
GO: 0006099
Organism
Wolbachia endosymbiont of Culex quinquefasciatus Pel [GN:wpi]
Gene
WP0983  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
WP1089  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
WP0547  isocitrate dehydrogenase, NAD-dependent [KO:K00031] [EC:1.1.1.42]
WP0520  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
WP0062  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
WP0093  lpdA; pyruvate dehydrogenase complex, E3 component, Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WP0896  lpdA; lipoamide dehydrogenase, pyruvate dehydrogenase complex, E3 component [KO:K00382] [EC:1.8.1.4]
WP0960  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
WP0961  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
WP0681  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
WP0580  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
WP1068  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
WP1069  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
WP0216  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
WP0855  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WP0086  pdhA; pyruvate dehydrogenase complex, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
WP1274  pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit [KO:K00162] [EC:1.2.4.1]
WP0791  aceF; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
wpi00010  Glycolysis / Gluconeogenesis
wpi00061  Fatty acid biosynthesis
wpi00190  Oxidative phosphorylation
wpi00220  Arginine biosynthesis
wpi00250  Alanine, aspartate and glutamate metabolism
wpi00280  Valine, leucine and isoleucine degradation
wpi00470  D-Amino acid metabolism
wpi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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