KEGG   PATHWAY: xla00515
Entry
xla00515                    Pathway                                
Name
Mannose type O-glycan biosynthesis - Xenopus laevis (African clawed frog)
Description
Biosynthesis of mammalian O-mannosyl glycans is initiated by the transfer of mannose from mannose-P-Dol to serine or threonine residue, followed by extensions with N-acetylglucosamine (GlcNAc) and galactose (Gal) to generate core M1, M2 and M3 glycans. Core M1 and M2 glycans can then be further attached by fucose residues, sialic acid terminals and sulfatded glucuroinc acid terminals. Core M3 glycan is involved in the synthesis of alpha-dystroglycan, a heavily glycosylated protein found in muscle and brain tissues. Core M3 glycan contains a tandem repeat of ribitol 5-phosphate (Rbo5P) and -alpha3-GlcA-beta3-Xyl- repeating structures. Defects of genes encoding core glycans and modified core M3 glycans are associated with various congenital diseases, such as muscular dystrophies caused by reduced O-mannosylation of alpha-dystroglycan in skeletal muscles [DS:H00120].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
xla00515  Mannose type O-glycan biosynthesis
xla00515

Module
xla_M00872  O-glycan biosynthesis, mannose type (core M3) [PATH:xla00515]
Other DBs
GO: 0035269
Organism
Xenopus laevis (African clawed frog) [GN:xla]
Gene
108698684  pomt2.L; protein O-mannosyl-transferase 2 isoform X1 [KO:K00728] [EC:2.4.1.109]
108699937  pomt1.S; protein O-mannosyl-transferase 1 isoform X1 [KO:K00728] [EC:2.4.1.109]
495292  pomgnt1.S; protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) S homeolog [KO:K09666] [EC:2.4.1.-]
414570  pomgnt1.L; uncharacterized protein LOC414570 [KO:K09666] [EC:2.4.1.-]
108706812  b4galt1.1.S; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
108712940  beta-1,4-galactosyltransferase 1 isoform X1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
108712957  b4galt1l.L; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
108712215  b4galt1.1.L; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
108712216  b4galt1.2.L; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
108704693  b4galt1l.S; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
108706813  b4galt1.2.S; beta-1,4-galactosyltransferase 1 [KO:K07966] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
100190782  b4galt2.S; UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 S homeolog [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
108714282  b4galt2.L; beta-1,4-galactosyltransferase 2 [KO:K07967] [EC:2.4.1.22 2.4.1.90 2.4.1.38 2.4.1.-]
414540  b4galt3.S; uncharacterized protein LOC414540 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
446718  b4galt3l2.S; UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 like 2S homeolog [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
379106  b4galt3.L; beta-1,4-galactosyltransferase 3 L homeolog [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
496041  b4galt3l1.L; beta-1,4-galactosyltransferase 3-like 1 L homeolog [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
108696936  b4galt3l2.L; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
108709275  b4galt3l1.S; beta-1,4-galactosyltransferase 3 [KO:K07968] [EC:2.4.1.90 2.4.1.38 2.4.1.-]
100462908  st3gal-iii; st3Gal-III protein [KO:K00781] [EC:2.4.3.6]
108715547  CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase isoform X1 [KO:K00781] [EC:2.4.3.6]
494776  b3gat1l.L; beta-1,3-glucuronyltransferase 1 like L homeolog precursor [KO:K00735] [EC:2.4.1.135]
108713680  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [KO:K00735] [EC:2.4.1.135]
108697547  b3gat1.S; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X2 [KO:K00735] [EC:2.4.1.135]
108696374  b3gat1.L; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 isoform X1 [KO:K00735] [EC:2.4.1.135]
108709276  b3gat1l.S; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1 [KO:K00735] [EC:2.4.1.135]
733177  b3gat2.S; beta-1,3-glucuronyltransferase 2 S homeolog [KO:K10157] [EC:2.4.1.135]
108716933  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2 isoform X2 [KO:K10157] [EC:2.4.1.135]
444281  chst10.L; carbohydrate sulfotransferase 10 precursor [KO:K09674] [EC:2.8.2.-]
100337597  fut9.S; fucosyltransferase 9 (alpha (1,3) fucosyltransferase) S homeolog [KO:K03663] [EC:2.4.1.152]
108716340  fut9.L; 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9 [KO:K03663] [EC:2.4.1.152]
100337596  fut6.2.L; fucosyltransferase 6 gene 2 L homeolog [KO:K07632] [EC:2.4.1.-]
108710013  alpha-(1,3)-fucosyltransferase 4 [KO:K07632] [EC:2.4.1.-]
108702220  mgat5b.S; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B [KO:K09661] [EC:2.4.1.-]
108701139  mgat5b.L; alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B isoform X1 [KO:K09661] [EC:2.4.1.-]
444520  pomgnt2.L; protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 precursor [KO:K18207] [EC:2.4.1.312]
431874  b3galnt2.L; UDP-GalNAc:beta-1, 3-N-acetylgalactosaminyltransferase 2 [KO:K09654] [EC:2.4.1.313]
496338  pomk.L; protein O-mannose kinase [KO:K17547] [EC:2.7.1.183]
108718486  crppa.L; D-ribitol-5-phosphate cytidylyltransferase [KO:K21031] [EC:2.7.7.40]
495324  fktn.S; fukutin S homeolog [KO:K19872] [EC:2.7.8.-]
108698503  fkrp.L; fukutin-related protein [KO:K19873] [EC:2.7.8.-]
446820  rxylt1.S; ribitol xylosyltransferase 1 S homeolog [KO:K21052] [EC:2.4.2.61]
108713949  b4gat1.L; beta-1,4-glucuronyltransferase 1 [KO:K21032] [EC:2.4.1.-]
398936  large2.S; LARGE xylosyl- and glucuronyltransferase 2-A precursor [KO:K09668] [EC:2.4.2.- 2.4.1.-]
734944  large2.L; LARGE xylosyl- and glucuronyltransferase 2-B precursor [KO:K09668] [EC:2.4.2.- 2.4.1.-]
108712551  LARGE xylosyl- and glucuronyltransferase 1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
108704366  LARGE xylosyl- and glucuronyltransferase 1 [KO:K09668] [EC:2.4.2.- 2.4.1.-]
Compound
C00063  CTP
C00789  CDP-ribitol
C01068  D-Ribitol 5-phosphate
C02189  [Protein]-L-serine
G10617  Dolichyl phosphate D-mannose
G13026   
G13027   
G13028   
G13082   
G13083   
G13084  O-Mannose core M1
G13085   
G13086  O-Mannose core M2
G13087   
G13088   
G13089   
G13090   
G13091  O-mannose core M3
G13092  Phospho-core M3
G13093   
G13094   
G13095   
G13096   
G13097   
G13098   
G13099   
G13100   
Reference
  Authors
Praissman JL, Wells L
  Title
Mammalian O-mannosylation pathway: glycan structures, enzymes, and protein substrates.
  Journal
Biochemistry 53:3066-78 (2014)
DOI:10.1021/bi500153y
Reference
  Authors
Stalnaker SH, Stuart R, Wells L
  Title
Mammalian O-mannosylation: unsolved questions of structure/function.
  Journal
Curr Opin Struct Biol 21:603-9 (2011)
DOI:10.1016/j.sbi.2011.09.001
Reference
  Authors
Kanagawa M, Kobayashi K, Tajiri M, Manya H, Kuga A, Yamaguchi Y, Akasaka-Manya K, Furukawa J, Mizuno M, Kawakami H, Shinohara Y, Wada Y, Endo T, Toda T
  Title
Identification of a Post-translational Modification with Ribitol-Phosphate and Its Defect in Muscular Dystrophy.
  Journal
Cell Rep 14:2209-23 (2016)
DOI:10.1016/j.celrep.2016.02.017
Reference
  Authors
Manya H, Yamaguchi Y, Kanagawa M, Kobayashi K, Tajiri M, Akasaka-Manya K, Kawakami H, Mizuno M, Wada Y, Toda T, Endo T
  Title
The Muscular Dystrophy Gene TMEM5 Encodes a Ribitol beta1,4-Xylosyltransferase Required for the Functional Glycosylation of Dystroglycan.
  Journal
J Biol Chem 291:24618-24627 (2016)
DOI:10.1074/jbc.M116.751917
Related
pathway
xla00510  N-Glycan biosynthesis
KO pathway
ko00515   
LinkDB

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