KEGG   PATHWAY: xom03430
Entry
xom03430                    Pathway                                
Name
Mismatch repair - Xanthomonas oryzae pv. oryzae MAFF 311018
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
xom03430  Mismatch repair
xom03430

Other DBs
GO: 0006298
Organism
Xanthomonas oryzae pv. oryzae MAFF 311018 [GN:xom]
Gene
XOO1527  XOO1527; DNA mismatch repair protein [KO:K03555]
XOO2577  XOO2577; DNA mismatch repair protein mutL [KO:K03572]
XOO4305  XOO4305; DNA helicase II [KO:K03657] [EC:5.6.2.4]
XOO2307  XOO2307; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
XOO2582  XOO2582; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
XOO3121  XOO3121; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
XOO2736  XOO2736; single-stranded-DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
XOO1323  XOO1323; single-stranded DNA binding protein [KO:K03111]
XOO1852  XOO1852; DNA polymerase III alpha chain [KO:K02337] [EC:2.7.7.7]
XOO0002  XOO0002; DNA polymerase III beta chain [KO:K02338] [EC:2.7.7.7]
XOO0964  XOO0964; DNA polymerase III tau and gamma subunits [KO:K02343] [EC:2.7.7.7]
XOO3140  XOO3140; DNA polymerase III delta subunit [KO:K02340] [EC:2.7.7.7]
XOO0811  XOO0811; DNA polymerase III delta' subunit [KO:K02341] [EC:2.7.7.7]
XOO0941  XOO0941; DNA polymerase III epsilon chai [KO:K02342] [EC:2.7.7.7]
XOO0758  XOO0758; DNA polymerase III holoenzyme chi subunit [KO:K02339] [EC:2.7.7.7]
XOO2288  XOO2288; DNA ligase [KO:K01972] [EC:6.5.1.2]
XOO0944  XOO0944; hypothetical protein [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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