KEGG   PATHWAY: xsa00020
Entry
xsa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Xanthomonas sacchari
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
xsa00020  Citrate cycle (TCA cycle)
xsa00020

Module
xsa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:xsa00020]
xsa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:xsa00020]
xsa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:xsa00020]
Other DBs
GO: 0006099
Organism
Xanthomonas sacchari [GN:xsa]
Gene
SB85_17685  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
SB85_07425  citrate synthase [KO:K01647] [EC:2.3.3.1]
SB85_01490  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
SB85_01505  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
SB85_15855  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
SB85_07775  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
SB85_03520  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
SB85_03525  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
SB85_03530  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SB85_10055  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
SB85_18260  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
SB85_18255  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
SB85_10825  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
SB85_20490  fumarate reductase [KO:K00239] [EC:1.3.5.1]
SB85_20485  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
SB85_20500  succinate dehydrogenase [KO:K00241]
SB85_20495  succinate dehydrogenase [KO:K00242]
SB85_03795  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
SB85_03485  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
SB85_08030  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
xsa00010  Glycolysis / Gluconeogenesis
xsa00053  Ascorbate and aldarate metabolism
xsa00061  Fatty acid biosynthesis
xsa00071  Fatty acid degradation
xsa00190  Oxidative phosphorylation
xsa00220  Arginine biosynthesis
xsa00250  Alanine, aspartate and glutamate metabolism
xsa00280  Valine, leucine and isoleucine degradation
xsa00350  Tyrosine metabolism
xsa00470  D-Amino acid metabolism
xsa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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